Dr Andrew D. Armitage
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- Qualifications:
BSc, MRes, PhD
- Biography:
Dr Andrew Armitage joined NRI as a Senior Fellow in 2020. His work centres on the basis of pathogenicity in plant disease, the diversity of pathogens in the environment and breeding crops with durable resistance. Andrew is a member of NRI’s Agriculture, Health and Environment Department, working across the Molecular Virology and Entomology, Plant Health and Postharvest Science research themes.
Before moving to NRI, Andrew was a project leader within the Genetics, Genomics and Breeding department at NIAB EMR. Based there for six years, Andrew performed research on pathosystems covering soft-fruit, top-fruit, vegetables and ornamentals alongside supporting work on mycoprotein production. He developed pipelines for a range of genomic analyses and provided support and training within the institute and for external collaborators.
Andrew holds a BSc in Ecology (Cardiff University), a MRes in Biology (Cardiff University) and a PhD investigating taxonomy, pathology and control of Alternaria alternataa non-native fungal quarantine pathogen of apple and pear (University of Warwick in partnership with FERA).
Andrew’s expertise includes genome assembly, annotation, comparative genomics, RNAseq, variant calling, amplicon sequencing, rAmpSeq and analysis of CrisprCas9 variants. He also performs bespoke analyses for organisms of interest such as pathogen effector identification, characterisation of host-adapted regions, systematics, resistance gene discovery and development of diagnostic assays.
- Selected Publications:
- Heaven, Thomas, Armitage, Andrew, Xu, Xiangming, Goddard, Matthew and Cockerton, Helen (2023) Dose-dependent genetic resistance to Azole fungicides found in the apple scab pathogen. Journal of Fungi, 9 (12):1136. pp. 1-18. ISSN 2309-608X (Online) (doi:https://doi.org/10.3390/jof9121136)
- Khayi, Slimane, Armitage, Andrew, Gaboun, Fatima, Meftah-kadmiri, Issam, Lahlali, Rachid, Fokar, Mohamed and Mentag, Rachid (2023) Chromosome-scale assembly uncovers genomic compartmentation of Fusarium oxysporum f. sp. albedinis, the causal agent of Bayoud disease in date palm. Frontiers in Microbiology, 14:1268051. pp. 1-14. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2023.1268051)
- Heaven, Thomas, Cockerton, Helen M., Xu, Xiangming, Goddard, Mat and Armitage, Andrew D. (2023) A genomic resource for the strawberry powdery mildew pathogen Podosphaera aphanis. Phytopathology, 113 (2). pp. 355-359. ISSN 0031-949X (Print), 1943-7684 (Online) (doi:https://doi.org/10.1094/PHYTO-03-22-0091-A)
- Kronmiller, Brent, Feau, Nicolas, Tabima, Javier, Ali, Shahin, Armitage, Andrew, Arrendondo, Felipe, Bailey, Bryan, Bollmann, Stephanie, Dale, Angela, Harrison, Richard, Hrywkiw, Kelly, Kasuga, Takao, McDougal, Rebecca, Nellist, Charlotte, Panda, Preeti, Tripathy, Sucheta, Williams, Nari, Ye, Wenwu, Wang, Yuanchao, Hamelin, Richard and Grunwald, Niklaus (2022) Comparative genomic analysis of 31 Phytophthora genomes reveal genome plasticity and horizontal gene transfer. Molecular Plant Microbe Interactions, 36 (1). pp. 26-46. ISSN 0894-0282 (Print), 1943-7706 (Online) (doi:https://doi.org/10.1094/MPMI-06-22-0133-R)
- Fontaine, Kévin, Fourrier-Jeandel, Céline, Armitage, Andrew, Boutigny, Anne-Laure, Crépet, Manuela, Caffier, Valérie, Gnide, Dossi Carine, Shiller, Jason, Le Cam, Bruno, Giraud, Michel, Ioos, Renaud and Aguayo, Jaime (2021) Identification and pathogenicity of Alternaria species associated with leaf blotch disease and premature defoliation in French apple orchards. PeerJ, 9:e12496. ISSN 2376-5992 (Print), 2167-8359 (Online) (doi:https://doi.org/10.7717/peerj.12496)
- Vega-Estévez, Samuel, Armitage, Andrew, Bates, Helen J., Harrison, Richard J. and Buscaino, Alessia (2021) The genome of the CTG(Ser1) yeast Scheffersomyces stipitis is plastic. mBio, 12 (5). ISSN 2150-7511 (Print), 2150-7511 (Online) (doi:https://doi.org/10.1128/mBio.01871-21)
- Nellist, Charlotte, Armitage, Andrew, Bates, Helen, Sobczyk, Maria, Luberti, Matteo, Lewis, Laura and Harrison, Richard (2021)Comparative analysis of host-associated variation in phytophthora cactorum. Frontiers in Microbiology, 12:679936. ISSN 1664-302X (Print), 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.679936)
- Jenkins, Sascha, Taylor, Andrew, Jackson, Alison C., Armitage, Andrew D., Bates, Helen J., Mead, Andrew, Harrison, Richard J.and Clarkson, John P. (2021) Identification and expression of "Secreted In Xylem" pathogenicity genes in fusarium oxysporum f. sp. pisi. Frontiers in Microbiology, 12:593140. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2021.593140)
- Adams, Thomas M., Armitage, Andrew D., Sobczyk, Maria K., Bates, Helen J., Tabima, Javier F., Kronmiller, Brent A., Tyler, Brett M., Grünwald, Niklaus J., Dunwell, Jim M., Nellist, Charlotte F. and Harrison, Richard J. (2020) Genomic investigation of the strawberry pathogen Phytophthora fragariae indicates pathogenicity is associated with transcriptional variation in three key races.Frontiers in Microbiology, 11:490. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2020.00490)
- Cockerton, Helen Maria, Li, Bo, Stavridou, Eleftheria, Johnson, Abigail, Karlström, Amanda, Armitage, Andrew Douglas, Martinez-Crucis, Ana, Galiano-Arjona, Lorena, Harrison, Nicola, Barber-Pérez, Nuria, Cobo-Medina, Magdalena and Harrison, Richard Jonathan (2020) Genetic and phenotypic associations between root architecture, arbuscular mycorrhizal fungi colonisation and low phosphate tolerance in strawberry (Fragaria × ananassa). BMC Plant Biology, 20:154. ISSN 1471-2229 (Online) (doi:https://doi.org/10.1186/s12870-020-02347-x)
- Passey, Thomas A. J., Armitage, Andrew D., Sobczyk, Maria K., Shaw, Michael W. and Xu, Xiangming (2020) Genomic sequencing indicates non‐random mating of Venturia inaequalis in a mixed cultivar orchard. Plant Pathology, 69 (4). pp. 669-676. ISSN 0032-0862 (Print), 1365-3059 (Online) (doi:https://doi.org/10.1111/ppa.13150)
- Armitage, Andrew, Cockerton, Helen M., Sreenivasaprasad, Surapareddy, Woodhall, James, Lane, Charles R., Harrison, Richard J. and Clarkson, John P. (2020) Genomics evolutionary history and diagnostics of the Alternaria alternata species group including apple and Asian pear pathotypes. Frontiers in Microbiology, 10:3124. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.03124)
- Taylor, Andrew, Armitage, Andrew D., Handy, Claire, Jackson, Alison C., Hulin, Michelle T., Harrison, Richard J. and Clarkson, John P. (2019) Basal rot of Narcissus: understanding pathogenicity in Fusarium oxysporum f. sp. narcissi. Frontiers in Microbiology, 10:2905. ISSN 1664-302X (Online) (doi:https://doi.org/10.3389/fmicb.2019.02905)
- Cockerton, Helen M., Li, Bo, Vickerstaff, Robert J., Eyre, Catherine A., Sargent, Daniel J., Armitage, Andrew D., Marina-Montes, Cesar, Garcia-Cruz, Ana, Passey, Andrew J., Simpson, David W. and Harrison, Richard Jonathan (2019) Identifying Verticillium dahliae resistance in strawberry through disease screening of multiple populations and image based phenotyping. Frontiers in Plant Science, 10:924. ISSN 1664-462X (Online) (doi:https://doi.org/10.3389/fpls.2019.00924)
- Wilson, Fiona M., Harrison, Kate, Armitage, Andrew D., Simkin, Andrew J. and Harrison, Richard J. (2019) CRISPR/Cas9-mediated mutagenesis of phytoene desaturase in diploid and octoploid strawberry. Plant Methods, 15:45. ISSN 1746-4811 (doi:https://doi.org/10.1186/s13007-019-0428-6)
- Armitage, Andrew D., Lysøe, Erik, Nellist, Charlotte F., Lewis, Laura A., Cano, Liliana M., Harrison, Richard J. and Brurberg, May B. (2018) Bioinformatic characterisation of the effector repertoire of the strawberry pathogen Phytophthora cactorum. PLOS ONE, 13 (10):e0202305. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0202305)
- Armitage, Andrew D., Taylor, Andrew, Sobczyk, Maria K., Baxter, Laura, Greenfield, Bethany P. J., Bates, Helen J., Wilson, Fiona, Jackson, Alison C., Ott, Sascha, Harrison, Richard J. and Clarkson, John P. (2018) Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae. Scientific Reports, 8:13530. ISSN 2045-2322 (Online) (doi:https://doi.org/10.1038/s41598-018-30335-7)
- Hulin, Michelle T., Armitage, Andrew D., Vicente, Joana G., Holub, Eric B., Baxter, Laura, Bates, Helen J., Mansfield, John W., Jackson, Robert W. and Harrison, Richard J. (2018) Comparative genomics of Pseudomonas syringae reveals convergent gene gain and loss associated with specialization onto cherry (Prunus avium). New Phytologist, 219 (2). pp. 672-696. ISSN 0028-646X (Print), 1469-8137 (Online) (doi:https://doi.org/10.1111/nph.15182)
- Fan, Rong, Cockerton, Helen M., Armitage, Andrew D., Bates, Helen, Cascant-Lopez, Emma, Antanaviciute, Laima, Xu, Xiangming, Hu, Xiaoping and Harrison, Richard J. (2018) Vegetative compatibility groups partition variation in the virulence of Verticillium dahliae on strawberry. PLOS ONE, 13 (2):e0191824. ISSN 1932-6203 (Online) (doi:https://doi.org/10.1371/journal.pone.0191824)
- Armitage, Andrew D., Barbara, Dez J., Harrison, Richard J., Lane, Charles R., Sreenivasaprasad, Surapareddy, Woodhall, James W. and Clarkson, John P. (2015) Discrete lineages within Alternaria alternata species group: identification using new highly variable loci and support from morphological characters. Fungal Biology, 119 (11). pp. 994-1006. ISSN 1878-6146 (doi:https://doi.org/10.1016/j.funbio.2015.06.012)
- Research / Scholarly Interests:
Andrew is a bioinformatician specialising in the evolution of pathogenicity in plant disease and breeding crops for resistance to these diseases. His core research interests focus on fungi and the oomycetes, but also include bacterial and viral systems. Andrew works across a number of horticultural pathosystems, with particular interest in the oomycete pathogens of Phytophthora and Pythium, and the fungal pathogens including Fusarium, Botrytis, Colletotrichum and Alternaria.
Research spans both fundamental science and applied science asking questions on evolution and host adaptation of a pathogen but also searching for new sources of crop resistance, developing diagnostic test for disease and targeting management strategies based upon pathogen populations in a field.
On a fundamental level, Andrew is interested in the evolution and regulation of the regions of fungal and oomycete genomes adapted for pathogenicity. How organisms partition their genome into faster and slower evolving regions is a key interest (2- and 3-speed genomes); including study of effectors (pathogenicity genes) and identification of transposons that have played major roles in genome evolution.
On an applied level, Andrew performs genome sequencing and comparative genomics to identify loci for diagnostic tests. Targeting diagnostics to the regions of the genome that determine pathogenicity is an important step to ensure specificity to the target organism. Similar analyses are also important in identifying the basis of pesticide resistance and monitoring levels of resistance in the field. He is also engaged in pre-breeding research to identify new sources of resistance to crop disease.
- Teaching Programmes:
BSc Biology programme:
Deputy programme leader for BSc biology programme (incl. coordination of 11 modules led by NRI)
Biotechnology for Crop Improvement (BOTA 1018) - Module leader & lecturer
Evolution (OBIO 1115) - Lecturer
Microbiology and the Environment (MICR 1009) - Lecturer
MSc Global & Environmental Change / Agriculture for Sustainable Development modules:
Lecturing on Integrated Pest Management (AGRI 1039)
Lecturing on Plant Disease (BIOT 1002)
MSc Biotechnology programme
Bioinformatics (BIOT 1011) - Lecturer
Natural Product Biotechnology (BIOT 1013) – Lecturer
- Research Projects:
Current and Recent Research Projects
An enhanced toolkit for Botrytis control in protected cropping | BBSRC PACE Horticulture | PI, £1.1M | 2024 - 2028
Botrytis cinerea is a devastating pathogen of over 1000 plant species and represents the primary postharvest disease of strawberries. Beyond typical fruit rots, recent reports of severe crown-based Botrytis infections highlight an emerging challenge to the industry. An additional threat is presented by the multi-fungicide resistant species Botrytis fragariae, a novel challenge to strawberry production in the EU and USA. Monitoring and control of these three Botrytis diseases is critical, with potential losses up to 80% in the absence of control strategies.
Options for control are limited with tighter legislation on active ingredients for chemical control and due to establishment of fungicide resistance in Botrytis. As such, greater emphasis is required on the use of integrated management strategies combining in-field diagnostics for pathogen surveillance, development of durable disease resistant crops and improved deployment of microbial-biocontrols within protected systems.
Through this project we develop an advanced toolbox for precision monitoring and integrated disease management of Botrytis in protected strawberry. This work is underpinned by the fundamental study of Botrytis host-specificity, genome evolution and genomic exchange.
Understanding microbiome dynamics of crops in controlled light environments | University of Greenwich Vice Chancellor PhD Scholarship | Co-I | 2024-2027
Understanding the true Medicinal value of medicinal mushrooms | Growing Kent and Medway Business Innovation Voucher | PI | 2024-2024
Epidemiology of anthracnose on cashew genotypes and sustainable control strategies in Côte d'Ivoire | RSIF PASET visiting PhD Scholarship | PI | 2024-2024
Striga management using a host-specific fungal pathogen | University of Greenwich, REF funding | PI | 2023-2024
Phenotyping flavour: novel high-throughput assays to assess aroma and bitterness across hop breeding collections | University of Greenwich, HEIF funding | PI | 2023-2024
Distribution characterization of the fungi responsible for post-harvest rots in yams and control with biopesticides in the Cote d’Ivoire | RSIF PASET visiting PhD Scholarship | PI | 2023-2023
Development of in-field tools for early detection of fruit storage rots | BBSRC Horticultural Quality and Food Loss Network | PI | 2022-2023
Breeding better biocontrols – Identifying targets for Clonostachys rosea strain improvement through partitioning genomic regions involved in insect infection from those involved in hyphal parasitism | University of Greenwich REF funding | PI | 2022-2023
Viral diversity and coevolution with Fungal and Oomycete pathogens | University of Greenwich, Vice Chancellor PhD Scholarship | PI | 2021-2024
Developing next generation diagnostics to prevent establishment of fungal pathogens in UK fruit crops | Royal Society of Biology undergraduate studentship | PI | 2021-2021
- Research Students:
(Current PhD/MRes students)
Medicago sativa as a model legume to understand Fusarium-legume interactions | Mahendra Paudel | MRes student, University of Greenwich | 2023 - present
Mining the untapped chemical potential of entomopathogenic fungi for sustainable agriculture and human health | Deanna Mills | LIDo DTP PhD student, University of Greenwich | 2023 - present
Safeguarding UK hop production from Verticillium nonalfalfae: Using genomics to develop race-specific diagnostics and generate Verticillium resistant hop through Host Induced Gene Silencing | Simon Thundow | SoCo DTP PhD student, University of Kent | 2022 - present
Viral diversity and coevolution with fungal and oomycete pathogens – Alexander Allman | Vice Chancellor’s PhD Scholarship, University of Greenwich | 2021 - present
(Recent completions)
A combined -omics approach to profiling the pathogenicity of Fusarium oxysporum isolates | Deanna Mills | LIDo DTP 3-month rotation project | 2023
Next generation breeding in hops | Klara Hadju | British Hop Association funded PhD studentship, NIAB EMR | 2019 - 2023
Novel ways of managing tree crop fungal diseases: Using precision diagnostic technologies to tailor disease management strategies | Thomas Heaven | Crop Science CTP PhD student | 2018 - 2024
(Visiting PhD students)
Epidemiology of anthracnose on cashew genotypes and sustainable control strategies in Côte d'Ivoire | Arsène Soro | PASET PhD visiting scholarship, Université Félix Houphouët-Boigny | 2024
Effect on climate change on the distribution characterization of the fungi responsible for post-harvest rots in yams and control with biopesticides in Côte d'Ivoire | Adjata Kamara | PASET PhD visiting scholarship, Université Félix Houphouët-Boigny | 2023
Polyphasic identification of fungal diseases and screening for resistance in African yam bean (Sphenostylis stenocarpa) germplasm to foliar and pod diseases | Olaide Ogunsanya | Commonwealth Split-site PhD Scholarship, IITA | 2022
(Undergraduate / visiting studentships)
Developing next generation diagnostics to prevent establishment of fungal pathogens in UK fruit crops | Ambrozy Boguslawski | Plant Health Undergraduate Studentship, Royal Society of Biology | 2021
Investigating Host Specificity of the Fungal Pathogen Alternaria alternata to Strawberry and Pear | Alice Smith | BMS undergraduate summer student (pg.3-5), NIAB EMR | 2019
Safeguarding UK hop production: Developing race-specific diagnostics to Verticillium albo-atrum in UK hop isolates | Giuliano Manetti | BSPP incoming Fellowship, NIAB EMR | 2019
- Greenwich Academic Literature Archive (GALA) link:
https://gala.gre.ac.uk/view/authors/7956.html
- Responsibilities:
- Deputy Programme Leader (BSc Biology)
- HPC steering group
- Awards:
- Microbiology Society: Eukaryotic Division (Committee member) | 2022 - present
- Microbiology Society Conference 2024 Finding the needle in the haystack, microbial surveillance in complex samples (Session organiser) | 2024
- Microbiology Society Conference 2023 Plant Microbe Interactions (Session organiser) | 2023
- BSPP workshop Practical Course on Plant Pathogen Diagnostics: From Symptoms to Sequence (Organising committee) | 2018
- Fourth International Horticulture Research Conference (Organising Committee) | 2017
- Membership of professional bodies: British Society for Plant Pathology (BSPP), British Mycological Society (BMS), American Phytopathological Society (APS), Microbiology Society.
- External Profiles:
ResearchGate
https://www.researchgate.net/profile/Andrew-Armitage-3
X
https://twitter.com/ADArmitage
LinkedIn
https://www.linkedin.com/in/andrew-armitage-a4025662/
Frontiers Loop
https://loop.frontiersin.org/people/691064/overview
Phone: +44 (0)1634 88 3303
Associate Professor in Bioinformatics & Plant Pathology
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Professor Steven Belmain
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- Qualifications:
BA, MSc, PhD, FRES, FHEA
- Biography:
Professor Steven Belmain completed his BA at the University of Vermont in 1990 before joining the Peace Corps and living in Mali, where his scientific interests became irreversibly entwined with overseas development. He then obtained an MSc and PhD at Birkbeck College, University of London.
Since joining NRI in 1998, Professor Belmain has become one of the leading international scientists researching the ecology of rodents as pests in agriculture and as disease vectors, with research activities across the UK, Europe, Asia and Africa aimed at helping rural and urban communities to overcome their pest problems.
He is a long-term advocate for ecologically-based rodent management, generating information on the impact of rodent pests on people’s livelihoods and health and developing sustainable methods of control without the use of poisons. This work is within a One Health framework that relies on multidisciplinary teams to understand environmental parameters and human behaviour with a view to developing ways of changing behaviours that reduce risk of zoonotic spill-over, crop damage and stabilising habitat biodiversity. Steve’s research on rodents was a key component of a Queen’s Anniversary Prize in 2019 for the University of Greenwich.
His research has been crucial in understanding the transmission risks of zoonoses as well as understanding the fundamental drivers of rodent population outbreaks. Professor Belmain also carries out research on insect pests and agroecology in the fields of chemical ecology, behaviour, ecosystem services, natural pest regulation and optimising the use of botanical pesticides.
Steve has starred in a nature documentary for the Discovery Channel Swarmchasers: Rats!
He is regularly featured in the news, e.g:
- Selected Publications:
- Carnaghi, M., Belmain, S.R., Hopkins, R.J., and Hawkes, F.M. (2021) Multimodal synergisms in host stimuli drive landing response in malaria mosquitoes. Scientific Reports, 11(1): 7379. https://doi.org/10.1038/s41598-021-86772-4
- Tomass, Z., Shibru, S. ,Yonas, M., Megaze, A., Woldu, Z., Houtte, N. van, Feleke, G., Belmain, S.R. and Leirs, H. (2020) Season and habitat affect diversity, abundance and reproductive state of small mammals near Lake Abaya, Ethiopia. Mammalia, https://doi.org/10.1515/mammalia-2020-0128
- Manyonyi, Abeid M., Mariki, Sayuni B., Mnyone, Laudslaus L., Belmain, Steven R. and Mulungu, Loth S. (2020) Effects of prescribed burning on rodent community ecology in Serengeti National Park. Journal of Vertebrate Biology, 69(2): 20001. https://doi.org/10.25225/jvb.20001
- Filemon, Elisante, Ndakidemi, Patrick A., Arnold, Sarah E. J. , Belmain, Steven R. , Gurr, Geoff M., Darbyshire, Iain, Xie, Gang and Stevenson, Philip C. (2020) Insect pollination is important in a smallholder bean farming system. PeerJ, 8:e10102 https://doi.org/10.7717/peerj.10102
- Krijger, Inge M., Gort, Gerrit, Belmain, Steven R. , Koerkamp, Peter W. G. Groot, Shafali, Rokeya B. and Meerburg, Bastiaan G. (2020) Efficacy of management and monitoring methods to prevent post-harvest losses caused by rodents. Animals, 10(9): 1612. https://doi.org/10.3390/ani10091612
- Vallès, Xavier, Stenseth, Nils Chr., Demeure, Christian, Horby, Peter, Mead, Paul S., Cabanillas, Oswaldo, Ratsitorahina, Mahery, Rajerison, Minoarisoa, Andrianaivoarimanana, Voahangy, Ramasindrazana, Beza, Pizarro-Cerda, Javier, Scholz, Holger C., Girod, Romain, Hinnebusch, B. Joseph, Vigan-Womas, Ines, Fontanet, Arnaud, Wagner, David M., Telfer, Sandra, Yazdanpanah, Yazdan, Tortosa, Pablo, Carrara, Guia, Deuve, Jane, Belmain, Steven R. , D’Ortenzio, Eric and Baril, Laurence (2020) Human plague: An old scourge that needs new answers. PLoS Neglected Tropical Diseases, 14(8): e0008251. https://doi.org/10.1371/journal.pntd.0008251
- Constant, N.L., Swanepoel, L., Williams, S.T., Soarimalala, V., Goodman, S.M., Massawe, A.T., Mulungu, L.S., Makundi, R.H., Mdangi, M.E., Taylor, P.J., Belmain, S.R., (2020) A comparative assessment on rodent impacts and cultural perceptions of ecologically based rodent management in three Afro‐Malagasy farming regions. Integrative Zoology. 15(6): 578-594. https://doi.org/10.1111/1749-4877.12447
- Lorica, R.P., Singleton, G.R., Stuart, A.M., Belmain, S.R., 2020. Rodent damage to rice crops is not affected by the water ‑ saving technique, alternate wetting and drying. Journal of Pest Science. 93: 1431–1442. https://doi.org/10.1007/s10340-020-01237-3
- Brown, P.R., Singleton, G.R., Belmain, S.R., Htwe, N.M., Mulungu, L.S., Mdangi, M.E., Cavia, R., 2020. Advances in understanding rodent pests affecting cereal grains. In: Maier, Dirk E., (ed.) Advances in Postharvest Management of Cereals and Grains. Burleigh Dodds Series in Agricultural Science. Burleigh Dodds Science Publishing Limited, Cambridge, UK. https://doi.org/10.19103/AS.2020.0072.04
- Stevenson Philip C, Belmain Steven R and Isman Murray B (Eds.) (2020) Pesticidal Plants: From Smallholder Use to Commercialisation. MDPI, Basel Switzerland 184 pages. https://doi.org/10.3390/books978-3-03928-789-5
- Mkenda, Prisila A., Patrick A. Ndakidemi, Philip C. Stevenson, Sarah E.J. Arnold, Iain Darbyshire, Steven R. Belmain, Jan Priebe, Anne C. Johnson, Julie Tumbo, and Geoff M. Gurr. (2020) Knowledge Gaps among Smallholder Farmers Hinder Adoption of Conservation Biological Control. Biocontrol Science and Technology 30:3, 256-277. https://doi.org/10.1080/09583157.2019.1707169
- Mkindi, Angela G, Yolice L B Tembo, Ernest R Mbega, Amy K Smith, Iain W Farrell, Patrick A Ndakidemi, Philip C Stevenson, and Steven R Belmain. (2020) Extracts of Common Pesticidal Plants Increase Plant Growth and Yield in Common Bean Plants. Plants 9 (2): 149. https://doi.org/10.3390/plants9020149
- Phambala, Kelita, Yolice Tembo, Trust Kasambala, Vernon H. Kabambe, Philip C. Stevenson, and Steven R. Belmain. (2020) Bioactivity of Common Pesticidal Plants on Fall Armyworm Larvae (Spodoptera frugiperda). Plants 9 (1): 112. https://doi.org/10.3390/plants9010112
- Mlyashimbi, E.C.M., Mariën, J., Kimaro, D.N., Tarimo, A.J.P., Machang’u, R.S., Makundi, R.H., Isabirye, M., Massawe, A.W., Leirs, H., Mdangi, M.E., Belmain, S.R. and Mulungu, L.S. (2020) Home Ranges, Sex Ratio and Recruitment of the Multimammate Rat (Mastomys natalensis) in Semi-Arid Areas in Tanzania. Mammalia, 84(4): 336–343. https://doi.org/10.1515/mammalia-2019-0048
- Mkindi, Angela G., Yolice Tembo, Ernest R. Mbega, Beth Medvecky, Amy Kendal-Smith, Iain W. Farrell, Patrick A. Ndakidemi, Steven R. Belmain, and Philip C. Stevenson. (2019) Phytochemical Analysis of Tephrosia vogelii across East Africa Reveals Three Chemotypes That Influence Its Use as a Pesticidal Plant. Plants 8 (12): 597. https://doi.org/10.3390/plants8120597
- Mkenda, Prisila A., Ndakidemi, Patrick A., Mbega, Ernest, Stevenson, Philip C. Arnold, Sarah E.J., Gurr, Geoff M. and Belmain, Steven R. (2019) Multiple ecosystem services from field margin vegetation for ecological sustainability in agriculture: scientific evidence and knowledge gaps. PeerJ, 7:e8091. https://doi.org/10.7717/peerj.8091
- Arnold, Sarah, Forbes, Samantha J., Hall, David, Farman, Dudley, Bridgemohan, Puran, Spinelli, Gustavo R., Bray, Daniel, Perry, Garvin B., Grey, Leroy, Belmain, Steven R. and Stevenson, Philip (2019) Floral odors and the interaction between pollinating Ceratopogonid midges and Cacao. Journal of Chemical Ecology. 45: 869–878; https://doi.org/10.1007/s10886-019-01118-9
- Mkenda, Prisila, Ndakidemi, Patrick A, Stevenson, Philip, Arnold, Sarah, Belmain, Steven R., Chidege, M and Gurr, Geoff M (2019) Field margin vegetation in tropical African bean systems harbours diverse natural enemies for biological pest control in adjacent crops. Sustainability, 11 (22):6399. https://doi.org/10.3390/su11226399
- Baril, Laurence, Vallès, Xavier, Stenseth, Nils Christian, Rajerison, Minoarisoa, Ratsitorahina, Maherisoa, Pizarro-Cerdá, Javier, Demeure, Christian, Belmain, Steven R. Scholz, Holger, Girod, Romain, Hinnebusch, Joseph, Vigan-Womas, Ines, Bertherat, Eric, Fontanet, Arnaud, Yazadanpanah, Yazdan, Carrara, Guia, Deuve, Jane, D'ortenzio, Eric, Angulo, Jose Oswaldo Cabanillas, Mead, Paul and Horby, Peter W (2019) Can we make human plague history? A call to action. BMJ Global Health, 4 (6):e001984. http://dx.doi.org/10.1136/bmjgh-2019-001984
- Mkenda, Prisila A., Ndakidemi, Patrick A., Stevenson, Philip C., Arnold, Sarah E. J., Belmain, Steven R., Chidege, Maneno, Gurr, Geoff M. and Woolley, Victoria C. (2019) Characterization of hymenopteran parasitoids of Aphis fabae in an African smallholder bean farming system through sequencing of COI 'mini-barcodes'. Insects, 10 (10):331. https://doi.org/10.3390/insects10100331
- Chakma, N., Sarker, N. J., Sarker, S. U., Sarker, S. K. Shafali, R. B. and Belmain, S. R. (2019). Impact of trap barrier systems on rodent damage to upland rice cropping systems during bamboo masting events. Crop Protection, 126: 104939. https://doi.org/10.1016/j.cropro.2019.104939
- Elisante, F., Ndakidemi, P. A., Arnold, S. E. J., Belmain, S. R., Gurr, G. M., Darbyshire, I., Gang Xie, G., Tumbo, J. and Stevenson, P. C. (2019). Enhancing knowledge among smallholders on pollinators and supporting field margins for sustainable food security. Journal of Rural Studies, 70: 75-86. https://doi.org/10.1016/j.jrurstud.2019.07.004
- Krijger, I. M., Cornelissen, J. B. W. J., Belmain, S. R., Shafali, R. B., & Meerburg, B. G. (2019) Evidence of Toxoplasma gondii in Rodents from Bangladesh. Vector-Borne and Zoonotic Diseases, https://doi.org/10.1089/vbz.2019.2440
- Mlyashimbi, E.C.M., Vanden Broecke, B., Marien, J., Kimaro, D.N., Tarimo, A.J.P., Machang’u, R.S., Isabirye, M., Makundi, R.H., Massawe, A.W., Hieronimo, P., Kifumba, D., Leirs, H., Mdangi, M.E., Belmain, S.R. and Mulungu, L.S. (2019) Soil type influences population dynamics and survival of the Multimammate rat (Mastomys natalensis) in semi-arid areas in Tanzania. Crop Protection, 124:104829. https://doi.org/10.1016/j.cropro.2019.05.023
- Tembo, Y., Mkindi, A. G., Mkenda, P. A., Mpumi, N., Mwanauta, R., Stevenson, P. C., Ndakidemi, P.A. and Belmain, S. R. (2018). Pesticidal Plant Extracts Improve Yield and Reduce Insect Pests on Legume Crops Without Harming Beneficial Arthropods. Frontiers in Plant Science, 9, 1425. https://doi.org/10.3389/fpls.2018.01425
- Stevenson, P. C., Green, P. W. C., Farrell, I. W., Brankin, A., Mvumi, B. M., & Belmain, S. R. (2018). Novel Agmatine Derivatives in Maerua edulis With Bioactivity Against Callosobruchus maculatus, a Cosmopolitan Storage Insect Pest. Frontiers in Plant Science, 9, https://doi.org/10.3389/fpls.2018.01506
- Chakma, N., Sarker, N.J., Belmain, S.R., Sarker, S.U., Aplin, K. and Sarker S.K. (2018) New records of rodent species in Bangladesh: Taxonomic studies from rodent outbreak areas in the Chittagong Hill Tracts. Bangladesh J. Zool. 46, 217–230. https://doi.org/10.3329/bjz.v46i2.39055
- Mlyashimbi, E.C.M., Mariën, J., Kimaro, D.N., Tarimo, A.J.P., Isabirye, M., Makundi, R.H., Massawe, A.W., Mdangi, M.E., Kifumba, D., Nakiyemba, A., Leirs, H., Belmain, S.R. and Mulungu, L.S. (2018) Relationships between seasonal changes in diet of multimammate rat (Mastomys natalensis) and its breeding patterns in semi-arid areas in Tanzania. Cogent Food and Agriculture. 4:1507509. https://doi.org/10.1080/23311932.2018.1507509
- Williams, S.T., Maree, N., Taylor, P., Belmain, S.R., Keith, M. and Swanepoel, L.H. (2018). Camera trap and questionnaire dataset on ecosystem services provided by small carnivores in agro-ecosystems in South Africa. Data in Brief. 18:753-759. https://doi.org/10.1016/j.dib.2018.03.071
- Massawe, Apia W., Makundi, Rhodes H., Zhang, Zhibin, Mhamphi, Ginethon, Liu, Ming, Li, Hong-Jun and Belmain, Steven R (2018) Effect of synthetic hormones on reproduction in Mastomys natalensis. Journal of Pest Science. 91(1):157-168.https://doi.org/10.1007/s10340-017-0894-4
- Williams, S., Swanepoel, L., Keith, M., Maree, N., Taylor, P., Belmain, S.R. (2018) Predation by small mammalian carnivores in rural agro-ecosystems: An undervalued ecosystem service? Ecosystem Services. 30:362-371. https://doi.org/10.1016/j.ecoser.2017.12.006
- Arnold, S. E. J, Bridgemohan, P, Perry, G. B., Spinelli, G. R., Pierre, B., Murray, F., Haughton, C., Dockery, O., Grey, L., Murphy, S. T., Belmain, S. R. and Stevenson, P. C. (2018) The significance of climate in the pollinator dynamics of a tropical agroforestry system. Agriculture, Ecosystems and Environment. 254: online first. https://doi.org/10.1016/j.agee.2017.11.013
- Krijger, Inge M., Belmain, Steven R., Singleton, Grant R., Groot Koerkamp, Peter W. G. and Meerburg, Bastiaan G. (2017) The need to implement the landscape of fear within rodent pest management strategies. Pest Management Science. 73(12): 2397-2402. http://dx.doi.org/10.1002/ps.4626
- Stevenson, Philip C., Isman, Murray B. and Belmain, Steven R. (2017) Pesticidal plants in Africa: a global vision of new biological control products from local uses. Industrial Crops and Products. 110: 2-9. https://doi.org/10.1016/j.indcrop.2017.08.034
- Kamanula, John F., Belmain, Steven R., Hall, David R., Farman, Dudley I., Goyder, David J., Mvumi, Brighton M., Masumbu, Friday F. and Stevenson, Philip C. (2017) Chemical variation and insecticidal activity of Lippia javanica (Burm. F.) Spreng essential oil against Sitophilus zeamais Industrial Crops and Products. 110: 75-82. http://dx.doi.org/10.1016/j.indcrop.2017.06.036
- Mkindi, Angela, Mpumi, Nelson, Tembo, Yolice, Stevenson, Philip C., Ndakidemi, Patrick A., Mtei, Kelvin, Machunda, Revocatus and Belmain, Steven R. (2017) Invasive weeds with pesticidal properties as potential new crops. Industrial Crops and Products. 110: 113-122. http://dx.doi.org/10.1016/j.indcrop.2017.06.002
- Green, Paul W. C., Belmain, Steven R., Ndakidemi, Patrick A., Farrell, Iain W. and Stevenson, Philip C. (2017) Insecticidal activity in Tithonia diversifolia and Vernonia amygdalina. Industrial Crops and Products. 110: 15-21. https://doi.org/10.1016/j.indcrop.2017.08.021
- Swanepoel, Lourens H., Swanepoel, Corrie M., Brown, Peter R., Eiseb, Seth J., Goodman, Steven M., Keith, Mark, Kirsten, Frikkie, Leirs, Herwig, Mahlaba, Themb’alilahlwa A. M., Makundi, Rhodes H., Malebane, Phanuel, von Maltitz, Emil F., Massawe, Apia W., Monadjem, Ara, Mulungu, Loth S., Singleton, Grant R., Taylor, Peter J., Soarimalala, Voahangy and Belmain, Steven R. (2017) A systematic review of rodent pest research in Afro-Malagasy small-holder farming systems: Are we asking the right questions? PLoS ONE, 12 (3):e0174554. http://dx.doi.org/10.1371/journal.pone.0174554
- Mahlaba, Themb’alilahlwa A. M., Monadjem, Ara, McCleery, Robert and Belmain, Steven R (2017) Domestic cats and dogs create a landscape of fear for pest rodents around rural homesteads. PLoS ONE, 12 (2):e0171593. http://dx.doi.org/10.1371/journal.pone.0171593
- Labuschagne, L., Swanepoel, L.H., Taylor, P.J., Belmain, S.R. and Keith, M. (2016). Are avian predators effective biological control agents for rodent pest management in agricultural systems? Biological Control. 101: 94-102. http://dx.doi.org/10.1016/j.biocontrol.2016.07.003
- Stevenson, P. C. and Belmain, S. R. (2016). Pesticidal plants in African agriculture: Local uses and global perspectives. Outlooks on Pest Management. 27(5): 226-230. http://dx.doi.org/10.1564/v27_oct_10
- Arnold, S. E. J., Stevenson, P. C., and Belmain, S. R. (2016). Shades of yellow: interactive effects of visual and odour cues in a pest beetle. PeerJ. 4:e2219 https://doi.org/10.7717/peerj.2219
- Mulungu, L. S., Ngowo, V., Mdangi, M. E., Katakweba, A. S., Tesha, P., Mrosso, F. P., Mchomvu, M., Massawe, A. W., Monadjem, A., Kilonzo, B., and Belmain, S. R. (2016). Survival and recruitment of the multimammate mouse, Mastomys natalensis (Smith 1834), in a rice agro-ecosystem. Mammalia. 80(2): 205–210. http://dx.doi.org/10.1515/mammalia-2014-0150
- Stevenson, P.C., Green, P.W., Veitch, N.C., Farell, I., Kusolwa, P. and Belmain, S.R. (2016). Nor-hopanes from Zanha africana root bark with toxicity to bruchid beetles. 123: 25-32. http://dx.doi.org/10.1016/j.phytochem.2016.01.008
- Mgode, G., Machang'u, R.S., Mhamphi, G.G., Katakweba, A., Mulungu, L., Durnez, L., Leirs, H., Hartskeerl, R.A. and Belmain, S.R. (2015). Leptospira serovars for diagnosis of leptospirosis in humans and animals in Africa: Common leptospira isolates and reservoir hosts. PLoS Neglected Tropical Diseases. 9(12): e0004251. http://dx.doi.org/10.1371/journal.pntd.0004251
- Mkenda, P., Mwanauta, R., Stevenson, P.C., Ndakidemi, P., Mtei, K. and Belmain, S.R. (2015). Extracts from field margin weeds provide economically viable and environmentally benign pest control compared to synthetic pesticides. PLoS ONE. 10(11): e0143530. http://dx.doi.org/10.1371/journal.pone.0143530
- Mkenda, P.A. Stevenson, P.C. Ndakidemi, P., Farman, D.I. and Belmain, S.R. (2015) Contact and fumigant toxicity of five pesticidal plants against Callosobruchus maculatus (Coleoptera: Chrysomelidae) in stored cowpea (Vigna unguiculata). International Journal of Tropical Insect Science. 35(4): 172-184. http://dx.doi.org/10.1017/S174275841500017X
- Arnold, S. E. J., Stevenson, P. C., and Belmain, S. R. (2015). Responses to colour and host odour cues in three cereal pest species, in the context of ecology and control. Bulletin of Entomological Research 105(4): 417-25. http://dx.doi.org/10.1017/S0007485315000346
- Belmain, S. R., Htwe, N. M., Kamal, N. Q., and Singleton, G. R. (2015). Estimating rodent losses to stored rice as a means to assess efficacy of rodent management. Wildlife Research 42(2): 132-142. http://dx.doi.org/10.1071/WR14189
- Mulungu, L. S., Sixbert, V., Ngowo, V., Mdangi, M., Katakweba, A. S., Tesha, P., Mrosso, F. P., Mchomvu, M., Kilonzo, B. S. and Belmain, S. R. (2015). Spatio-temporal patterns in the distribution of the multi-mammate mouse, Mastomys natalensis, in rice crop and fallow land habitats in Tanzania. Mammalia 79(2): 177–184. http://dx.doi.org/10.1515/mammalia-2014-0006
- Mulungu, L. S., Lagwen, P. P., Mdangi, M. E., Kilonzo, B. S., and Belmain, S. R. (2014). Impact of spatio-temporal simulations of rat damage on yield of rice (Oryza sativa) and implications for rodent pest management. International Journal of Pest Management 60: 269–274. http://dx.doi.org/10.1080/09670874.2014.967326
- Stevenson, P. C., Arnold, S. E. J., and Belmain, S. R. (2014). Pesticidal Plants for Stored Product Pests on Small-holder Farms in Africa. In ‘Advances in Plant Biopesticides’. (Ed D. Singh.) pp. 149–172. (Springer India: New Delhi). http://dx.doi.org/10.1007/978-81-322-2006-0_9
- Sola, P. Mvumi, B. M., Belmain, S.R., Ogendo, J. O., Mponda, O., Kamanula, J.F., Nyirenda, S. P. and Stevenson, P.C., (2014) Botanical pesticide production, trade and regulatory mechanisms in sub-Saharan Africa: making a case for plant-based pesticidal products. Food Security. 6(3): 369-384. http://dx.doi.org/10.1007/s12571-014-0343-7
- Grzywacz, D., Stevenson, P.C., Belmain, S.R., Wilson, K. (2014) Improving food security in Africa: A new approach using indigenous ecological resources for pest control. Food Security. 6(1): 71-86. http://dx.doi.org/10.1007/s12571-013-0313-5
- Arnold S.E.J., Peralta Idrovo, M.E., Lomas Arias, L.J., Belmain, S.R. and Stevenson, P.C. (2014) Herbivore defence compounds occur in pollen and reduce bumblebee colony fitness. Journal of Chemical Ecology. 40(8):878-881. http://dx.doi.org/10.1007/s10886-014-0467-4
- Jancloes, M.F., Bertherat, E., Scheider, C., Belmain, S.R., Munoz-Zanzi, C., Hartskeerl, R., Costa, F., Denis, J. and Benschop, J. (2014) Towards a “One Health” strategy against leptospirosis. Planet@Risk>. 2(3): 204-206. https://core.ac.uk/download/pdf/42389743.pdf
- Research / Scholarly Interests:
With rodents transmitting more than 60 diseases to people and domestic animals, damaging food production systems and exacerbating sanitation problems, few would argue that society's rat problems have been solved. But overcoming the challenges posed by rodents to our livelihoods is possible. A new paradigm of research, ecologically-based rodent management, is gaining momentum. Improving rodent management particularly in Low and Middle Income Countries of the world could be one of the most important interventions of the 21st century to reduce poverty and improve people's livelihoods.
His work in agroecology aims to help farming communities reduce their use of harmful synthetic pesticides, particularly by helping to develop natural alternatives using botanical extracts to control insects and crop pathogens and increase environmental resilience through conservation biological control, agrobiodiversity and empowering smallholder farmers through farmer research networks.
Steve is Centre Leader for research centre Sustainable Agriculture for One Health and leads the Behavioural Ecology research group
- Teaching Programmes:
Leads the Biology undergraduate module Animal Science and Environmental Physiology and contributes to NRI’s Master’s degree in Agriculture for Sustainable Development
- Research Projects:
A One Health approach to managing rodent pests impacting human health and wellbeing in South African townships: OHRatSA
This (£600,000 project (2025-2028) is jointly funded by UK Medical Research Council and the South African Medical Research Council and aims to understand complex problems caused by rodents in South African townships, particularly the threat of rodent borne infections on human health, nutritional security and mental health and wellbeing. The project will innovate methods of uncovering neglected problems and generate unique information on how current rodent management practices may be exacerbating the rodent problem through negatively impacting personal and community agency and wellbeing. We will take a One Health ecologically-based approach to resolving rodent pest issues through the evaluation of innovative technologies collaborating with community and public authorities to assess social and environmental efficacy and sustainability.
Our research questions are:
- What is the impact of rats on food and nutrition security in urban environments? This will focus particularly on the disease threats from urine and faecal contamination within household food stores and leftover cooked food, the promotion of aflatoxins, and nutritive losses from rodents selectively eating the seed germ.
- What is the impact of rats on mental health and wellbeing in South African townships? We argue impacts on mental health and wellbeing are likely to be severe in African contexts, particularly where social stigmas within communities can lead to reduced personal agency and erosion of social capital. Rodent pest issues can be perceived as something to be ashamed of, where often taboos, community pressure and public perceptions may increase mental health problems amongst the most vulnerable members of a community suffering from rodent pest problems.
- Can new innovations in ecologically based rodent management be safer and more socially accepted than current reliance on poisons for public and environmental health programmes? We will take advantage of new innovations in rodent fertility control to evaluate stakeholder (public, private sector, local authority) acceptability of rodent contraceptives and how contraceptives may reduce risk of disease transmission when compared to using rodenticides.
One Health approach to tick-borne disease control through manipulation of reservoir host communities at landscape scale
This (£1,250,000 project (2023-2026) is funded by UK Research and Innovation and Department for Environment, Food and Rural Affairs One Health approach to vector borne diseases programme. The project partners are the Animal and Plant Health Agency, Forest Research, University of York, University of Salford. The UK's Net Zero 2050 policy contains bold plans to plant millions of trees each year to expand landcover in woodlands and forests, not only helping to sequester carbon but also helping to lower local temperatures as the climate changes. While this is a valid ambition, such changes in land use may have implications for the spread of unwanted non-native species and disease. As such these plans must be evaluated to develop a robust strategy and avoid unintended consequences from our interventions to mitigate climate change and achieve a net zero society. The grey squirrel is an invasive species in the UK, with detrimental impacts on the conservation of the native red squirrel and with bark stripping damage to trees and forests that is estimated to cost the UK economy £37 million per year. Grey squirrels, now distributed through most of Great Britain, are the dominant small mammal in many habitats and important hosts of ticks that feed on them. The ticks that feed on grey squirrels can pick up infections in the squirrel's blood and can transmit these infections to people bitten by infected ticks, notably Lyme disease. The number of people contracting Lyme disease is growing in all parts of the UK, with hotspots in Scotland, the southwest of England and southern England. Efforts to control grey squirrels are under way in many parts of the UK, to help the native red squirrel populations which are under threat by greys. This programme has wide public support and is trying to control grey squirrels humanely using contraceptives. Some experts have argued that the removal of grey squirrels by itself could result in a reduction in Lyme disease risk, but this has not yet been proven. This is because other wild animals can be fed upon by ticks, and it is not clear what will happen when grey squirrels are removed in terms of disease risk.
Our project plans to answer this question by determining what happens when grey squirrel populations are being reduced, and how this affects ticks and diseases. We plan to look at novel ways of controlling or monitoring ticks by determining what attracts and repels them. We also plan to develop predictive models on what would happen as the UK becomes more covered in woodlands and forests in the future where climate is also changing, and what this would mean for grey squirrel populations, and the ticks and diseases they host. Finally we plan to engage with the public, particularly those trying to save the red squirrel, but also the wider public and their attitudes towards squirrels, ticks and infections such as Lyme disease to ensure we understand people's concerns and how best to deal with a changing environment and climate.
Farmer Research Networks for Ecological Pest and Disease Management
This is the fifth project phase of funding ($520,000) (2023-2026) received from the McKnight Foundation, an independent private philanthropic charity established by the McKnight family in the United States to improve the quality of life for present and future generations. See: https://www.ccrp.org/ The foundation has been funding NRI’s collaborative research to develop sustainable pest management options for smallholder farmers since 2009, and this project (2023-2026) builds on 14+ years of previous funding provided by McKnight, providing the continuity to address complex issues related to improving access to high quality ecosystem services for pest management in smallholder crop production. The project involves partners at the Nelson Mandela African Institute of Science and Technology in Tanzania, and Lilongwe University of Agriculture and Natural Resources in Malawi.
The next step in the development of pesticidal plants has farmer researchers at the core of agro-ecological research where we try to develop landscape level research activities that help improve pest regulation. This involves increasing botanical diversity to help provide habitat and food for natural enemies and pollinators and increasing the adopting of natural products for pest control so that insect diversity can be maintained.
Developing effective rodent control strategies to reduce disease risk in ecologically and culturally diverse rural landscapes
This £2 million research project (2021-2024) is funded by the UKRI MRC Global Challenge Research Fund on global health. Besides NRI, the project involves partners from the University of Aberdeen, University of St. Andrews, Pasteur Institute Madagascar, Vahatra Association Madagascar, Sokoine University of Agriculture Tanzania and Muhimbili University of Health and Allied Sciences Tanzania. The ultimate aim of the project is to reduce the risk from rodent-borne infections, and improve health and well-being by increasing the capacity to develop rodent-control measures that are applicable, sustainable and resilient given local ecological, epidemiological, agricultural and socio-cultural contexts. The project will focus on rural landscapes in Tanzania and Madagascar, using exemplar case-study host-pathogen systems with contrasting ecological and epidemiological characteristics. We will exploit high quality existing data and conduct new experimental studies, integrating these with state-of-the-art statistical and modelling approaches, as well as ethnographic and social science studies, in order to inform the co-development of effective rodent management strategies with communities and stakeholders. Community co-development and engagement will take place from the start of the project, with community representatives involved in decision making processes, in the implementation and collection of data and interpreting impact.
Future rodent management for pig and poultry health (RodentGate)
This project (2020-2024) is part of a European consortium funded through the ERA-NET International coordination of research on infectious animal diseases https://www.icrad.eu/ The project works across Belgium, Netherlands, Germany, Poland and the United Kingdom with a total project value of €1,750,000, with UK funding of €500,000 from UKRI BBSRC. The project aims to maintain or improve the health of pigs and poultry with respect to rodent-borne diseases in a situation where rodenticides are no longer accepted as a major tool for rodent management. The specific objectives are 1) to document changes in disease risk for pigs and poultry when classical rodent management around farms is prevented and rodent populations around farms change in abundance or composition and 2) to propose appropriate evidence-based and economically sustainable strategies for the ecologically-based management of rodents and rodent-borne infections around farms.
- Research Students:
Current PhD Students
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Allan Baino
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Hope Okon
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Samantha Beaudoin
- Greenwich Academic Literature Archive (GALA) link:
https://gala.gre.ac.uk/view/authors/547.html
- Responsibilities:
Research Centre Leader Sustainable Agriculture for One Health
- Awards:
- Lifetime Recognition of Excellence Award in Rodent Biology awarded in 2022 from International Society for Rodent Biology and Management
- Contributions to the University’s Queen’s Anniversary Prize 2019 on innovative pest management
- Fellow, Royal Entomological Society (FRES)
- Fellow, Higher Education Academy (FHEA)
- Member of the British Ecological Society
- Committee member of the World Health Organisation's Global Leptospirosis Environmental Action Network
- Coordinating member of the International Society of Zoological Sciences
- Associate Editor, Wildlife Research
- Editorial Board, Biopesticides International
- Executive Committee Secretary for the International Conference on Rodent Biology and Management
- International Committee for the African Small Mammal Symposium
- External Profiles:
ORCID
https://orcid.org/0000-0002-5590-7545
Google Scholar
https://scholar.google.co.uk/citations?hl=en&user=oG0Mo78AAAAJ&view_op=list_works&sortby=pubdate
Research Gate
https://www.researchgate.net/profile/Steven_Belmain
LinkedIn
https://www.linkedin.com/in/steven-belmain-5b3b262b/
ResearcherID (WoS)
https://publons.com/researcher/2720943/steven-r-belmain/
Academia
https://gre.academia.edu/StevenBelmain
Phone: +44 (0)1634 88 3761
Professor of Ecology & Centre Leader for Sustainable Agriculture for One Health
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Dr Judy M. Bettridge
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- Qualifications:
BSVc, MSc, PhD, MRCVS
- Biography:
Dr Judy Bettridge trained as a veterinary surgeon at the University of Liverpool, where she returned after five years in clinical practice to complete a Masters in Veterinary Infection and Disease Control. This was followed by a PhD in veterinary epidemiology and infection ecology in scavenging chickens in Ethiopia, in collaboration with the International Livestock Research Institute (ILRI). Subsequently, Judy held a postdoctoral research position based out of ILRI Nairobi, Kenya, exploring the effects of poverty and livestock-keeping on zoonotic disease transmission in urban environments. She returned to the UK in 2018 and worked for a period in the civil service as a senior epidemiologist at the Animal and Plant Health Agency, before joining the Natural Resources Institute at the University of Greenwich in 2020.
Judy’s current research covers a variety of topics relating to food safety, food systems and the epidemiology and surveillance of bacterial pathogens.
- Selected Publications:
- Mounsey, Oliver, et al. (2024) Genomic epidemiology of third-generation cephalosporin-resistant Escherichia coli from Argentinian pig and dairy farms reveals animal-specific patterns of co-resistance and resistance mechanisms. Applied and Environmental Microbiology, 90 (3). pp. 1-17. (doi: 10.1128/aem.01791-23)
- Bettridge, Judy, et al. (2023) Using SNP addresses for Salmonella Typhimurium DT104 in routine veterinary outbreak detection. Epidemiology and Infection, 151:e187. pp. 1-14. (doi: 10.1017/S0950268823001723)
- Muloi, Dishon, et al. (2022) Population genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban landscape. Nature Microbiology, 7. pp. 581-589. (doi: 10.1038/s41564-022-01079-y)
- Bettridge, Judy , Thomas, Lian, Mutua, Florence, Pal, Himadri and Grace, Delia (2022) Review of food safety training in low- and middle-income countries. Report. Global Alliance for Improved Nutrition, Washington, DC.
- Bettridge, Judy, Psifidi, Androniki, Terfa, Zelalem G., Desta, Takele T., Lozano-Jaramillo, Maria, Dessie, Tadelle, Kaiser, Pete, Wigley, Paul, Hanotte, Olivier and Christley, Robert M. (2018) The role of local adaptation in sustainable production of village chickens. Nature Sustainability, 1 (10). pp. 574-582. ISSN 2398-9629 (Online) (doi: 10.1038/s41893-018-0150–9)
- Research / Scholarly Interests:
Dr. Bettridge’s work is broad, and has spanned a variety of animal and pathogen species combinations. She is interested in systems-thinking approaches, understanding trade-offs, and incorporating multivariate statistics, metrics and qualitative evaluations in user-friendly ways to evaluate complex outcomes.
Examples include working with the Argentinian dairy sector to explore options for setting up monitoring of antimicrobial usage; and why adopting a single metric that allows international country-level comparisons (mg/PCU) may be less useful to farmers than metrics that break down usage by animal age, drug class and administration route. Although the latter requires more data recording effort, it can help users pinpoint areas for interventions (such as vaccines, hygiene or management changes) that help reduce disease and hence the need for antimicrobial therapies.
Another example of Judy’s work evaluated how a new method of bacterial typing based on genomics (the SNP address) might be combined with existing surveillance tools for early outbreak detection. The additional resolution of bacterial strains provided by genomic typing methods adds complexity, because of the very large number of strains that can be identified, compared to traditional methods, such as phage-typing. However, it lends itself well to surveillance, especially when combined with a method that identifies expanding spatial clusters.
Judy has also worked on evaluating the multiple components that go into the design of successful approaches to food safety training in LMICs. This work used a qualitative evaluation framework drawing on behavioural and educational theories to assess approach, audience, context and curricula, and made a number of recommendations to help food safety educators design and evaluate their own programmes.
- Teaching Programmes:
- CDT programme – Introduction to Quantitative Research Methods; Statistics Clinics (with Andrew Mead, Rothamsted Research)
- ENV-1096 Research Methods for postgraduates module – two lectures on software, data management and introductory statistics
- ENV-1192 Introduction to Ecological Modelling and Programming. Guest lecture on modelling animal roaming behaviours
- Research Projects:
“FARMS-SAFE” (Future-proofing Antibacterial resistance Risk Management Surveillance and Stewardship in the Argentinian Farming Environment), led by the University of Bristol and Universidad Nacional De La Plata, Argentina.
Antimicrobial resistance (AMR) is a global threat to health and development. Argentina, has well-established monitoring of medicine use and resistance withing the human health sector, but no equivalent programmes for the veterinary sector, food or environment. This project has created a surveillance structure to measure use and resistance in the dairy and pig industries and is training researchers who can continue to monitor and evaluate interventions to reduce medicine usage and AMR in the future.
“RodentGate” is a project led by the University of Antwerp, investigating the role of rodents in and around pig and poultry farms in the EU and UK as reservoirs of livestock diseases, and projecting what may happen under more stringent control of rodenticides. Ecologically-based rodent management allows controls to be precisely targeted, which requires understanding the rodent demography, life history, space use, dispersal capacities, pathogen presence and transmission patterns in the rodent population.
NRI is leading a workpackage evaluating the presence and diversity of relevant pathogens in wild rodents in and around pig and poultry farms, and has to date detected a variety of bacterial pathogens in rodents, including Leptospira, Brachyspira, Lawsonia and Salmonella, as well as antibiotic resistant bacterial strains of Enterobacteriaceae.
The RodentGate project has been extended, in collaboration with APHA, to include a postgraduate research student who is exploring the longitudinal genetic diversity of Salmonella in rodents and pigs on a case study farm and evaluating the implications for genomic typing and surveillance.
- Greenwich Academic Literature Archive (GALA) link:
https://gala.gre.ac.uk/view/authors/7945.html
- Responsibilities:
NRI Mid-career Researcher Network Representative (Food and Markets Department)
- Awards:
- Member of the Royal College of Veterinary Surgeons
- Member of the British Veterinary Association and the Society for Veterinary Epidemiology and Preventive Medicine
- Awarded the N.E. Roberts prize: Infection-interactions in Ethiopian village chickens (2014, University of Liverpool Institute of Infection and Global Health)
- External Profiles:
ORCID
https://orcid.org/0000-0002-3917-4660
LinkedIn
https://www.linkedin.com/in/bettridge-judy-41776272/
Google Scholar
https://scholar.google.com/citations?hl=en&user=9QO7YSUAAAAJ
Research Gate
https://www.researchgate.net/profile/Judy_Bettridge
Phone: +44 (0)1634 88 3021
Senior Lecturer in Biostatistics for Food and Agriculture
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Dr Sophie Bouvaine
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- Qualifications:
BSc, MSc, PhD
- Biography:
Dr Sophie Bouvaine graduated from the University of York with a PhD, in which she studied the transmission of a major cereal disease by aphids. This project was co-supervised by Neil Boonham from the Food and Environment Research Agency. Dr Bouvaine then undertook a postdoctoral position at Cornell University (USA) with Professor Angela E. Douglas, where she became interested in the physiology of insects pests. She led a research project aimed at understanding the sterol metabolism of major disease-transmitting insect. This project was with the collaboration of Dr Spencer Behmer from Texas A&M (USA). The research produced valuable results in the understanding of how insects deal with a diet poor in sterol and was published in a peer-reviewed journal. In the same institution, Dr Bouvaine was able to investigate the sap sucking insects' symbiosis and its shared metabolism. This led to one of the first accounts of a shared metabolic pathway between an insect and a bacterium and was published in Applied and Environmental Microbiology. Dr Bouvaine is now a research fellow at NRI and, during that last few months, has been investigating the transcriptome of cassava in order to find resistance genes for Cassava Brown Streak Virus. In addition, she is working on the insect vector of the disease and, by studying its symbiosis, she aims to find an innovative solution to disrupt the transmission of this devastating virus.
- Selected Publications:
- Teltscher, F., Bouvaine, S., Gibson, G., Dyer, P., Guest, J., Young, S., & Hopkins, R. J. (2021). Understanding mosquito host-choice behaviour: a new and low-cost method of identifying the sex of human hosts from mosquito blood meals. Parasites and Vectors, 14(1). https://doi.org/10.1186/s13071-021-04577-w
- Tembo, M., Adediji, A. O., Bouvaine, S., Chikoti, P. C., Seal, S. E., & Silva, G. C. (2020). A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports, 10(1). https://doi.org/10.1038/s41598_020_76612_2
- Chi, Y., Pan, L.-L., Bouvaine, S., Fan, Y.-Y., Liu, Y.-Q., Liu, S.-S., Seal, S., & Wang, X.-W. (2020). Differential transmission of Sri Lankan cassava mosaic virus by three cryptic species of the whitefly Bemisia tabaci complex. Virology, 540. https://doi.org/10.1016/j.virol.2019.11.013
- Ghosh, S., Bouvaine, S., Richardson, S. C. W., Ghanim, M., & Maruthi, M. N. (2018). Fitness costs associated with infections of secondary endosymbionts in the cassava whitefly species Bemisia tabaci. Journal of Pest Science, 91(1). https://doi.org/10.1007/s10340-017-0910-8
- Otti, G., Bouvaine, S., Kimata, B., Mkamillo, G., Kumar, P. L., Tomlins, K., & Maruthi, M. N. (2016). High-throughput multiplex real-time PCR assay for the simultaneous quantification of DNA and RNA viruses infecting cassava plants. Journal of Applied Microbiology, 120(5). https://doi.org/10.1111/jam.13043
- Ghosh, S., Bouvaine, S., & Maruthi, M. (2015). Prevalence and genetic diversity of endosymbiotic bacteria infecting cassava whiteflies in Africa Microbe-host interactions and microbial pathogenicity. BMC Microbiology, 15(1). https://doi.org/10.1186/s12866-015-0425-5
- Bouvaine, S., Faure, M.-L., Grebenok, R. J., Behmer, S. T., & Douglas, A. E. (2014). A dietary test of putative deleterious sterols for the aphid Myzus persicae. PLoS ONE, 9(1). https://doi.org/10.1371/journal.pone.0086256
- Maruthi, M. N., Bouvaine, S., Tufan, H. A., Mohammed, I. U., & Hillocks, R. J. (2014). Transcriptional response of virus-infected cassava and identification of putative sources of resistance for cassava brown streak disease. PLoS ONE, 9(5). https://doi.org/10.1371/journal.pone.0096642
- Russell, C. W., Bouvaine, S., Newell, P. D., & Douglas, A. E. (2013). Shared metabolic pathways in a coevolved insect-bacterial symbiosis. Applied and Environmental Microbiology, 79(19). https://doi.org/10.1128/AEM.01543-13
- Bouvaine, S., T.Behmer, S., Lin, G. G., Faure, M.-L., Grebenok, R. J., & Douglas, A. E. (2012). The physiology of sterol nutrition in the pea aphid Acyrthosiphon pisum. Journal of Insect Physiology, 58(11). https://doi.org/10.1016/j.jinsphys.2012.07.014
- Bouvaine, S., Boonham, N., & Douglas, A. E. (2011). Interactions between a luteovirus and the GroEL chaperonin protein of the symbiotic bacterium Buchnera aphidicola of aphids. Journal of General Virology, 92(6). https://doi.org/10.1099/vir.0.029355-0
- Douglas, A. E., Bouvaine, S., & Russell, R. R. (2011). How the insect immune system interacts with an obligate symbiotic bacterium. Proceedings of the Royal Society B: Biological Sciences, 278(1704). https://doi.org/10.1098/rspb.2010.1563
- Research / Scholarly Interests:
The aim of Dr Bouvaine's research is to use new molecular technologies to develop tools for the protection of important staple crops such as cassava. Her research specifically aims at deciphering the intricate mechanisms by which insect pests transmit plant-pathogenic pathogens so that this knowledge can be applied to find innovative solutions for protecting crops and hence improving the lives of people.
- Research Projects:
Dr Bouvaine's current project involves the use of endosymbiotic bacteria as a novel biocontrol agent for crop pests and diseases. The aim is to exploit virulent strains of the endosymbiotic bacteria, Wolbachia, as a novel biocontrol agent for controlling the harmful insect pest, whitefly, in order to protect African cassava from destructive whitefly-transmitted plant viruses. The whitefly, Bemisia tabaci, is one of the most devastating agricultural pests for poor farmers over the last three decades owing to its wide geographic spread, the diverse ways that it damages crops, its capacity to develop resistance to insecticides, and, perhaps most significantly, its ability to transmit over 110 plant viruses that cause devastating crop disease pandemics worldwide. Amongst the most important of these viruses of recent times, cassava brown streak viruses (CBSVs), which cause cassava brown streak disease (CBSD), threaten the food security of over 40 million cassava-dependent poor in eastern Africa because the disease causes complete rotting of infected tubers. The lack of disease-resistant varieties and alternative whitefly control options such as insecticides (either unavailable or too expensive for many African farmers) leaves producers completely vulnerable to the damages caused by whitefly-transmitted CBSV.
- Greenwich Academic Literature Archive (GALA) link:
https://gala.gre.ac.uk/view/authors/5995.html
- Responsibilities:
Research
- Awards:
- Former member of Royal entomological society
- Former member of British society for plant pathology
- Member of Entomological society of America
- External Profiles:
ORCID
https://orcid.org/0000-0002-0788-3243
Phone: +44 (0)1634 88 3158
Plant & Insect Molecular Biologist
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Barbara Tiddi
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- Qualifications:
BSc, PhD
- Biography:
Dr Barbara Tiddi joined the University of Greenwich in 2023. In her previous appointments, Barbara was a Lecturer in Conservation Science at the Bristol Zoological Society, and an Associate Lecturer in Biological Anthropology in the School of Anthropology and Conservation at the University of Kent. Before that, she was based for six years at the German Primate Center (DPZ) as postdoctoral fellow in the Cognitive Ethology Lab where she investigated the adaptive function of female sexual signals in Neotropical primates. Barbara received her PhD in Natural Sciences and Psychology from Liverpool John Moores University (UK), and a BSc in Biological Sciences and Applied Ecology from the University of Rome “La Sapienza” (Italy).
Much of Barbara’s previous work has focused on investigating how specific features of primate social systems shape their behavioural responses in a way that deviates from what broadly predicted by ecological and economic models used in the study of animal behaviour. Her collaborative work with the Argentinean National Research Council (CONICET) has also contributed to address the issue of primate-human interaction within the context of parasite infections and social connectivity. Her research has been largely based on fieldwork in Argentina and Costa Rica.
- Selected Publications:
- Agostini, I., Vanderhoeven, E., Pfoh, R., Beldomenico, P., and Tiddi, B. (2023) Experimental evidence of parasite-induced behavioural alterations modulated by food availability in wild capuchin monkeys. Scientific Reports: e3083.
- Pfoh, R., Tiddi, B., Di Bitetti, M.S. and Agostini, I. (2021) Grooming site preferences in black capuchin monkeys: hygienic vs. social functions revisited. American Journal of Primatology: e22920.
- Wheeler, B.C., Fahy, M., and Tiddi, B. (2019) Experimental evidence of heterospecific alarm signal recognition via associative learning in wild capuchin monkeys. Animal Cognition, DOI: 10.1007/s10071-019-01264-3.
- Tiddi, B., Pfoh, R., and Agostini, I. (2019) The impact of food provisioning on parasite infection in wild black capuchin monkeys: a network approach. Invited article contribution for the special issue “Social network analysis on primates” edited by Drs Ivan Puga-Gonzalez, Sebastian Sosa, Cedric Sueur. Primates 60: 297-306.
- Bernaldo, E., Wheeler, B.C., Heistermann, M., Hammerschimdt, K., and Tiddi, B. (2018) Do sexual calls in female black capuchin monkeys (Sapajus nigritus) vary with fertility? An acoustic analysis. American Journal of Primatology 9: e22920.
- Tiddi, B., Heistermann, M., Fahy, M., and Wheeler, B.C. (2018) Resource defence polygyny in primates? Female response to experimental manipulation of male resource control. PLoS ONE 13(5): e0197020.
- Kean, D., Tiddi, B., Schino, G., Heistermann, M., and Wheeler, B.C. (2017) Feeling anxious? The mechanisms of vocal deception in tufted capuchin monkeys. Animal Behaviour 130: 37- 46.
- Tiddi, B., Polizzi di Sorrentino, E., Fischer, J., and Schino, G. (2017) Acquisition and functional consequences of social knowledge in macaques. Royal Society Open Science 8; 4(2):160639.
- Tiddi, B., Wheeler, B.C., and Heistermann, M. (2015) Female behavioral proceptivity functions as a probabilistic signal of fertility, not female quality, in a New World primate. Hormones and Behavior 73:148-155.
- Pasquaretta, C., Levé, M., Claidière, N., van de Waal, E., Whiten, A., MacIntosh, A.J.J., Pelé, M., Bergstrom, M.L., Borgeaud, C., Brosman, S.F., Crofoot, M.C., Fedigan, L.M., Fichtel, C., Hopper, L.M., Mareno, M.C., Petit, O., Schneoll, A.V., Polizzi di Sorrentino, E., Thierry, B., Tiddi, B., and Sueur, C. (2014) Social networks in primates: smart and tolerant species have more efficient networks. Scientific Reports 4:7600.
- Research / Scholarly Interests:
Barbara’s current interests broadly focus on two areas: 1) understanding how research in animal behaviour can contribute to practical aspects of conservation (e.g., wildlife reintroduction), and 2) implementing self-sustainable community-led conservation initiatives to promote conservation and sustainable habitat management. Her most recent work in collaboration with the Distance State University of Costa Rica (UNED) has centred on evaluating the effectiveness on threatened amphibian populations of water supplementation via capacity-building of local communities.
Pest Behaviour
- Teaching Programmes:
NRI Programme Leader for Biology
- Research Projects:
Previous Funded Research Projects
- 2012 Volkswagen Stiftung Evolutionary Biology Postdoctoral Fellowship, “Sexual behavior and social constraints in a New World primate”.
- 2011 Leakey Foundation Research Grant, “Female mating strategies in tufted capuchin monkeys (Sapajus nigritus)”.
- 2011 German Academic Exchange Service (DAAD) Fellowship, “Adaptive function of female sexual calls in tufted capuchin monkeys (Sapajus nigritus)”.
- Awards:
Memberships:
- IUCN SSC (Species Survival Commission) Primate Specialist Group Neotropics member
- Primatological Society of Great Britain (PSGB) Conservation Working Party
Institutional services:
- Reviewer Editor on the Editorial Board of Behavioral and Evolutionary Ecology, Frontiers in Ecology and Evolution
- Peer Reviewer: Leakey Foundation, Proceedings of the National Academy of Sciences, Animal Behaviour, International Journal of Primatology, American Journal of Primatology, Ethology, Behaviour, Behavioural Processes, Behavioral Ecology and Sociobiology.
Lecturer in Applied Ecology/Environmental Sciences
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Dr Conor Walsh
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- Qualifications:
PG Cert, BSc, MSc, PhD, AFHEA
- Biography:
Dr. Walsh is an interdisciplinary environmental scientist, having joined the university in 2017. He does not consider himself a subject specialist in the strictest sense, having worked in areas as diverse as sports science and naval architecture. Ostensibly he works within the areas of resource (and carbon) accounting and lifecycle assessment (LCA) and techno-economics. Prior to joining the university, he served as a research associate/fellow in the Tyndall Centre for Climate Change Research, based in the University of Manchester. During this period, he worked on diverse projects on issues relating to low grade heat in industry, the emissions of the UK and Global shipping sector, and comparing marine fuel cycles.
He took part in a consortium project involving several universities such as UCL and University of Strathclyde, and was involved in diverse activities including economic modelling, shipping system modelling and lifecycle assessment. During this period he sat on the special emissions working group of the IMarEST (Institute of Marine Engineering, Science & Technology). He led the development of detailed trade scenario for climate changes futures which integrated econometric, material flow analyses and the outputs of integrated assessment models. This work demonstrating the trade-offs of decarbonisation of the global economy and shipping amid increased bio-energy trade. During this time, he was also involved in numerous teaching and outreach activities, mostly at MSc level, teaching on the operationalisation of the sustainability concept.
Shortly after arriving at the university He has led the MSc ‘Global Environmental Change’ which is framed around the land water energy and food nexus, as well as leading modules at both undergraduate and postgraduate level, on subjects such as use of indicator species and carbon accounting. Since arriving at the University, His research work has shift to agricultural systems, which is fitting as he undertook PhD research, in on the Ecological Footprint, a well-established, land-based indicator of sustainability. (This was done as part of a research agenda setting processing involving practitioners around world, including the concepts founder).
As a member of the Natural Resources Institute (NRI) He been involved in diverse research activities with an agronomic focus, including the EU funded value chain analysis for analysis (VCA4D) programme as well other projects examining the impact of coffee cultivation (collaborating with colleagues in Costa Rica and Guatemala) and the development of climate smart agriculture (CSA) decision tool in collaboration with Syngenta foundation. Specifically, he has led a Defa funded LCA project involving Rothamsted research, University of Surrey and London Southbank University. This project involves undertaking a lifecycle assessment of a ‘foodbasket’ of a range of different commodities. This world demonstrates important trade-offs in terms of competing interests such as reducing the environmental burden and increasing the animal welfare of specific livestock systems. In a mentoring capacity, he routinely advises colleagues as thy work towards obtaining teaching qualifications. He is frequently involved in media appearing having spoken on BBC radio on issues relating to climate change and has been quoted in The Times on issues relating to climate change education. He is supervising PhD projects across such varied topics as value chain shocks, building design and evolving climate activism.
- Selected Publications:
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Walsh, C., Haggar, J., Cerretelli, S. and Van Oijen, M., 2025. Comparing carbon agronomic footprint and sequestration in Central American coffee agroforestry systems and assessing trade-offs with economic returns. Science of The Total Environment, 961, p.178360. (https://doi.org/10.1016/j.scitotenv.2024.178360)
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Walsh, C., Renn, M., Klauser, D., De Pinto, A., Haggar, J., Abdur, R., Hopkins, R. and Zamil, F.(2024) Translating Theory into Practice: A Flexible Decision-Making Tool to Support the Design and Implementation of Climate-Smart Agriculture Projects. Agricultural Systems, 219, p.104060 (https://doi.org/10.1016/j.agsy.2024.104060)
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Walsh, Conor , Mander, Sarah and Larkin, Alice (2017) Charting a low carbon future for shipping: A UK perspective. Marine Policy, 82. pp. 32-40. ISSN 0308-597X (Print), 1872-9460 (Online) (https://doi.org/10.1016/j.marpol.2017.04.019)
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Walsh, Conor and Mander, Sarah (2016) Contextualising the drivers for trade: Some lessons from historical case studies. Marine Policy, 75. pp. 290-299. ISSN 0308-597X (https://doi.org/10.1016/j.marpol.2016.04.004)
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Mander, Sarah, Walsh, Conor , Gilbert, Paul, Traut, Michael and Bows, Alice (2012) Decarbonizing the UK energy system and the implications for UK shipping. Carbon Management, 3 (6). pp. 601-614. ISSN 1758-3004 (Print), 1758-3012 (Online) (https://doi.org/10.4155/cmt.12.67)
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Walsh, Conor and Thornley, Patricia (2012) A comparison of two low grade heat recovery options. Applied Thermal Engineering, 53 (2). pp. 210-216. ISSN 1359-4311 (Print), 1873-5606 (Online) (https://doi.org/10.1016/j.applthermaleng.2012.04.035)
- Research / Scholarly Interests:
Dr Walsh is a member of Ecosystem Service’s research group and his research interests involve the quantification of environmental burdens and services associated with human activities and comparing them with alternative metrics. Recent work comparing the carbon footprint and economic performance of Coffee farms in demonstrates the challenge/prerequisites for achieving both carbon neutrality and economic viability.
Often such work can be accepted into other tools such sector or agronomic models. For example, the LCA work on marine fuels was used as input for a sectoral energy model, which demonstrated how incompatible Grey Hydrogen was with wider decarbonisation efforts for global shipping.
Throughout his research career Conor has either utilised or developed different tools with applicability at different scales. Recently (2024) my involvement in the development of a simple climate smart agriculture (CSA) decision aid tool is intended to aid scaling up CSA interventions by allowing project level perspectives to contribute to a portfolio-scale view and in doing so, contribute to portfolio level design. This is helpful in operationalising the CSA concept and demonstrating how meeting the triple objectives of productivity, adaptation and mitigation is especially challenging at smaller scales.
- Teaching Programmes:
Conor leads the programme MSc Global Environmental Change.
Within this programme he leads the module AGRI-1302 ‘Environmental Footprinting’.
He also teaches on the following MSc level modules:
- ENVI-1096 Research Methods for postgraduates
- ENVI-1170 Fundamentals of Meteorology and Climate Change
- ENVI-1196 Climate Change, Food Security and Sustainable Development
- AGRI-1048 Independent Research Project
- Research Projects:
Comparative Life Cycle Assessment of Commodity Production; Identifying Opportunities for Sustainable Productivity Growth Across the Agri-Food Chain.
A comparative LCA exercise that aims to quantify the environmental burden of different commodities. This is important as trade-offs between different commodities occur across different impact types. The results suggest driver of impacts that are relevant for UK food policies such as the trade-off between environmental and welfare objectives and how cycles of seasonal production for commodities consumed year-round may offshore and concentrate important environmental burdens such as water scarcity.
Climate Smart Outcome Methodology
This project developed a simple tool for assessing the relative performance climate smart agriculture (CSA) initiatives. This was undertaken in order to inform portfolio design and assessment as part of process of co-creation. The application of which at workshops demonstrated important trade-offs between profitability and other CSA pillars, notably the challenge in facilitation both adaptation and mitigation at the farm level.
- Greenwich Academic Literature Archive (GALA) link:
http://gala.gre.ac.uk/view/authors/6391.html
- Responsibilities:
-
Programme Leader - MSc. Global Environmental Change
-
Dr Walsh provided data in support of sustainable travel campaign designed to encourage use of the inter campus bus.
-
Dr Walsh regularly mentors colleagues who are applying for fellowship of the Higher Education Academy.
- Awards:
- External Profiles:
ORCID
https://orcid.org/0000-0003-4829-2754
Scopus
https://www.scopus.com/authid/detail.uri?origin=resultslist&authorId=33568426300&zone
Phone: +44 (0)1634 88 3254
Associate Professor of Environmental Science and Sustainability
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Dr Daniel P Bray
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- Qualifications:
BSc, PhD, Fellow of the Royal Entomological Society (FRES)
- Biography:
Daniel Bray joined NRI in January 2016, moving from the Chemical Ecology Group at the Swedish University of Agricultural Sciences.
Daniel graduated from the University of Nottingham in 2000 with a first class degree in Biological Science and worked for the Open University while still an undergraduate. He then went on to complete a PhD in 2004 on host-parasite interactions in shrews, supervised by Prof. Paula Stockley at the University of Liverpool. For almost ten years, he worked with Prof. Gordon Hamilton at Keele University and Prof. Reginaldo Brazil at FIOCRUZ on the chemical ecology of sand flies, conducting extensive field work in Brazil. He also worked briefly with Prof. Jenny Mordue at the University of Aberdeen on a projecting targeting sea lice parasites of salmon. During this period he also completed a Medici Business Fellowship.
In 2013 Daniel was awarded a Senior Visiting Fellowship by the DAAD to conduct a project on aquaculture with Dr Joanna Miest at GEOMAR in Germany. In 2014 he was awarded an EU Marie Curie Fellowship to work with Prof. Rickard Ignell at SLU (Sweden) targeting biting midge vectors of agricultural diseases.
Daniel's main interest lies in understanding and exploiting chemical ecology to protect crops and improve animal and human health. In addition, he is also exploring how chemical ecology can be used to detect and prevent disease in aquaculture. Daniel is also an expert statistician, and regularly conducts data analysis consultancy for agricultural companies.
- Selected Publications:
- Athanassiou, Christos, Bray, Daniel P., Hall, David R, Phillips, Charles and Vassilakos, Thomas N. (2018) Factors affecting field performance of pheromone traps for tobacco beetle, Lasioderma serricorne and tobacco moth, Ephestia elutella. Journal of Pest Science, 91 (4). pp. 1381-1391. ISSN 1612-4758 (Print), 1612-4766 (Online) (doi:https://doi.org/10.1007/s10340-018-0987-8)
- Isberg, Elin, Bray, Daniel Peter, Hillbur, Ylva and Ignell, Rickard (2017) Evaluation of host-derived volatiles for trapping Culicoides biting midges (Diptera: Ceratopogonidae). Journal of Chemical Ecology, 43 (7). pp. 662-669. ISSN 0098-0331 (Print), 1573-1561 (Online) (doi:https://doi.org/10.1007/s10886-017-0860-x)
- Courtenay, O., Dilger, E., Carter, V., Bray, D., Bell, M., Gonzalez de Heredia, M., Borges-Alves, G., Nunes, C., Brazil, R. and Hamilton, G. (2017) Cluster randomised trial and development of a sandfly sex pheromone lure to reduce Leishmania infantum infection. Tropical Medicine & International Health, 22 (S1). p. 66. ISSN 1360-2276 (Print), 1365-3156 (Online) (doi:https://doi.org/10.1111/tmi.12978)
- Isberg, Elin, Bray, Daniel Peter, Birgersson, Göran, Hillbur, Ylva and Ignell, Rickard (2016) Identification of cattle-derived volatiles that modulate the behavioral response of the biting midge culicoides nubeculosus. Journal of Chemical Ecology, 42 (1). pp. 24-32. ISSN 0098-0331 (Print), 1573-1561 (Online) (doi:https://doi.org/10.1007/s10886-015-0663-x)
- Pimenta, Paulo Filemon, Bray, Daniel P., Carter, Vicky, Alves, Graziella B., Brazil, Reginaldo P., Bandi, Krishna K. and Hamilton, James G. C. (2014) Synthetic sex pheromone in a long-lasting lure attracts the visceral leishmaniasis vector, lutzomyia longipalpis, for up to 12 weeks in Brazil. PLoS Neglected Tropical Diseases, 8 (3):e2723. ISSN 1935-2727 (Print), 1935-2735 (Online) (doi:https://doi.org/10.1371/journal.pntd.0002723)
- Pimenta, Paulo Filemon, Bray, Daniel P., Yaman, Khatijah, Underhill, Beryl A., Mitchell, Fraser, Carter, Victoria and Hamilton, James G. C. (2014) Multi-modal analysis of courtship behaviour in the old world Leishmaniasis Vector Phlebotomus argentipes. PLoS Neglected Tropical Diseases, 8 (12):e3316. ISSN 1935-2735 (Print), 1935-2735 (Online) (doi:https://doi.org/10.1371/journal.pntd.0003316
- Research / Scholarly Interests:
Daniel's primary interest is to develop new ways to protect crops, animals and people from pest insects and disease vectors. Much of this work is conducted alongside the UK horticultural industry, with Prof David Hall at NRI and Michelle Fountain and colleagues at NIAB-EMR. He is also interested in how the same techniques can be applied to improve security worldwide, and has conducted fieldwork in Brazil and Bangladesh.
His approach centres on identifying chemicals that provoke a behavioural response in the target species, which can be formulated as attractive lures or repellents. His work encompasses physiological techniques including electroantennography and single sensillum recording, laboratory bioassays on target species, and field testing and formulation of novel attractants and repellents. Working with Prof. Gordon Hamilton at Keele University, Daniel developed and tested a novel pheromone based tool for controlling Lutzomyia longipalpis, the sand fly vector of visceral leishmaniasis in Brazil. During his Marie Curie Fellowship at the Swedish Agricultural University (SLU), he worked with Prof Rickard Ignell and colleagues to test new repellents and attractants to protect livestock from biting midges.
Daniel is also very interested in how this same approach could be applied in an aquatic setting. At the University of Aberdeen he was involved in identifying chemicals which could be used to attract the sea louse Lepeophtheirus salmonis. These small crustaceans are parasites of salmon, and cause major economic losses in farmed fish. More recently, he has been working with colleagues at the University of Greenwich to develop a novel application of chemical ecology to detected disease in aquaculture.
- Research Projects:
Current research projects
Development of a pheromone-based monitoring system for a newly identified Contarinia midge on the Canadian Prairies (2017-2020) Canadian Agricultural Research Program
Exploitation of Interspecific Signals to Deter Oviposition by Spotted-Wing Drosophila (2019-2022) BBSRC Industrial Partnership Award with NIAB-EMR.
Auto-Dissemination of entomopathogenic fungi for sustainable control of spotted wing drosophila (2018-2021) Innovate UK with NIAB-EMR.
Oviposition behaviour of Aedes aegypti (DTA PhD studentship)
Push-pull against spotted wing drosophila (BBSRC-CTP studentship with NIAB-EMR)
Control of red poultry mite (British Egg Marketing Board PhD studentship)
Previous research projects
Development of a monitoring and mass trapping trap against pepper weevil (2017-2018) Innovate Wales
MIDGETRAP-An innovative semiochemical based tool for monitoring and control of biting midge vectors of bluetongue and Schmallenberg disease. (2014) EU Intra-European Fellowship for career development, SLU Sweden
Reducing the impact of disease on the sustainability of international aquaculture through an innovative odour-based detection system. (2013). Senior visiting fellowship, DAAD, Germany
Field trials of synthetic sex pheromone to reduce visceral leishmaniasis transmission by Lutzomyia longipalpis in Brazil. (2005-2015), PI Gordon Hamilton, Welcome Trust, Keele University.
- Greenwich Academic Literature Archive (GALA) link:
http://gala.gre.ac.uk/view/authors/6238.html
- External Profiles:
ORCID
https://orcid.org/0000-0001-9914-2356
Phone: +44 (0)1634 88 3729
Associate Professor in Chemical Ecology
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Dr Frances Hawkes
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- Qualifications:
Cert. Nat. Sci. (Open), BSc (Hons), PhD, MRSTMH, FRES
- Biography:
Dr Frances M. Hawkes completed her PhD (2009-2013) at the University of Greenwich, where she was supervised by Professors Gabriella Gibson and Steve Torr (Liverpool School of Tropical Medicine). Her PhD project developed cutting edge 3D tracking to follow mosquitoes flying in low light intensities, the results of which allowed Dr Hawkes to develop a prototype trap for outdoor biting mosquitoes. After a post-doctoral period at the London School of Hygiene and Tropical Medicine where she undertook research supporting incrimination of the vectors of zoonotic malaria in Malayasia, she has since continued this approach of conducting laboratory and field research into vector behaviour and then using the findings to develop sampling strategies for insects such as malaria mosquitoes. This work was the focus of 2015 documentary commissioned by the BBC called “Living with Malaria” and was recognised as part of a Queen’s Anniversary Prize awarded to the University of Greenwich in 2020 for Smart, Sustainable Pest Management. She holds several patents and licensing agreements. Dr Hawkes continues to lead research into the ecology of zoonotic malaria vectors in Southeast Asia and how land use change may be driving disease spillover, and on the surveillance and assessment of British mosquitoes of potential public health importance. Her research on mosquito surveillance has been applied to the blackfly vectors of parasites that cause onchocerciasis, also called river blindness, and she currently leads a number of research threads on developing blackfly surveillance techniques for disease elimination surveillance, including entomological capacity development in West Africa.
Dr Hawkes collaborates with research institutes including Kenya Medical Research Institute, Institute de Recherche en Sciences de le Sante (Burkina Faso) and the International Institute of Tropical Agriculture. She partners with colleagues in academia such as Universiti Malaysia Sabah (Malaysia), Imperial College London (UK), Osun State University (Nigeria), University of Glasgow (UK), University of Energy and Natural Resources (Ghana), Menzies School of Health Research (Australia), Sokoine University of Agriculture (Tanzania) and Lancaster University (UK). Outside of academia, Dr Hawkes collaborates with charities such as Sightsavers, industry partners such as Biogents GmbH (Germany), and public health bodies including the UK Health Security Agency and National Onchocerciasis Elimination Committees. Most of Dr Hawkes’ research involves interdisciplinary collaborations across natural and social sciences and she has worked with artists and historians, including in curating a national exhibition at the Royal Geographical Society in London.
As a member of the Vector Control Working Groups of both Roll Back Malaria and the Asia-Pacific Malaria Elimination Network, Dr Hawkes contributes to developing strategy and responsive research to achieve malaria elimination within a generation and has trained entomologists from the National Malaria Control Programmes of Vietnam, Sri Lanka, Thailand, Malaysia and Indonesia. She also currently sits on the steering committee of DISSECT – Developing Innovative Scalable Solutions to Entomology Gaps and Cross-Border Transmission of Onchocerciasis and has been an invited expert of the WHO’s Onchocerciasis Technical Advisory Subgroup.
Currently co-supervising four PhD students, Dr Hawkes also contributes to lectures and module leadership across BSc programmes in Biology and Environmental Science and Post-graduate taught programmes, including dissertation and independent project supervision. She has contributed guest lectures to the Liverpool School of Tropical Medicine, University of Oregon and the London School of Hygiene and Tropical Medicine.
- Selected Publications:
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Akoton R, Sovegnon PM, Djihinto OY, Medjigbodo AA, Agonhossou R, Adegnika AA, Gibson G, Djouaka R, Hawkes FM, Djogbénou LS. Using non-insecticidal traps indoors can complement insecticide-treated nets to target resistant malaria vectors. Parasites & Vectors (in press).
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Cooper AN, Malmgren L, Hawkes FM, Farrell IW, Hien DFdS, Hopkins RJ, Lefèvre T, Stevenson PC (2025) Identifying mosquito plant hosts from ingested nectar secondary metabolites, Scientific Reports, 15:6488. https://doi.org/10.1038/s41598-025-88933-1
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Adeleke MA, Opara KN, Mafuyai HB, Nwoke BEB, Surakat OA, Akinde SB, Nwoke M, Chikieze F, Yaro C, Mmaduabuchi UG, Igbe M, Makata E, Oyediran F, Anyaike C, Tongjura JD, Hawkes FM, Iwalewa ZO (2024) Improving onchocerciasis elimination surveillance: trials of odour baited Esperanza Window Traps to collect blackfly vectors and real-time qPCR detection of Onchocerca volvulus in blackfly pools, Parasites & Vectors, 17(471). https://doi.org/10.1186/s13071-024-06554-5
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Cheke RA, Hawkes FM, Carnaghi M (2024) Short- and long-range dispersal by members of the Simulium damnosum Complex (Diptera: Simuliidae), Vectors of Onchocerciasis: a review, Insects, 15:606. https://www.mdpi.com/2075-4450/15/8/606
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Carnaghi M, Mandelli F, Feugère L, Joiner J, Young S, Belmain SR, Hopkins RJ, Hawkes FM. (2024) Protocol for rearing and using Anopheles mosquitoes for tracking and behavioural characterization in wind tunnel bioassays, STAR Protocols, 5:3, 103180. https://doi.org/10.1016/j.xpro.2024.103180
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Medlock JM, Hawkes FM, Cheke RA, Gibson G, Abbott AJ, Cull B, Gandy S, Hardy H, Acott T, Vaux AGC. (2024) Mosquito diversity and abundance in English wetlands – empirical evidence to guide a prediction tool for wetland suitability for mosquitoes (Diptera: Culicidae), Journal of the European Mosquito Control Association, 1-27. https://doi.org/10.52004/2054930x-20231002
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Shepherd-Gorringe M, Pettit M, Hawkes FM (2024) Lethal and sublethal impacts of membrane-fed ivermectin are concentration-dependent in Anopheles coluzzii, Parasites & Vectors, 17:228. https://doi.org/10.1186/s13071-024-06287-5
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Vaux A, Abbott A, Johnston C, Hawkes FM, Hopkins RJ, Cull B, Gibson G, Cheke RA, Callaghan A, Medlock J. (2024) An update on the ecology, seasonality and distribution of Culex modestus in England, Journal of the European Mosquito Control Association. https://doi.org/10.52004/jemca20231003
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Akoton R, Sawadogo SP, Tossou E, Nikiema AS, Tchigossou G, Sovegnon PM, Djogbenou L, Zeukeng F, Hawkes FM, Dabire RK, Djouaka R, Gibson G (2024) Using artificial odours to optimize attractiveness of Host Decoy Traps to malaria vectors, Journal of Medical Entomology, tjae010. https://doi.org/10.1093/jme/tjae010
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Carnaghi M, Mandelli F, Feugère L, Joiner J, Young S, Belmain SR, Hopkins RJ, Hawkes FM (2024) Visual and thermal stimuli modulate mosquito-host contact with implications for improving malaria vector control tools, iScience, 27(1):108578. https://doi.org/10.1016/j.isci.2023.108578
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Hardy H, Harte SJ, Hopkins RJ, Mnyone L, Hawkes FM (2023) The influence of manure-based organic fertilisers on the oviposition behaviour of Anopheles arabiensis, Acta Tropica, 244:106954. https://doi.org/10.1016/j.actatropica.2023.106954
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David MR, Maciel-de-Freitas R, Peterson MT, Bray D, Hawkes FM, Mandela Fernández-Grandon G, Young S, Gibson G, Hopkins RJ (2023) Aedes aegypti oviposition-sites choice under semi-field conditions, Medical & Veterinary Entomology. https://doi.org/10.1111/mve.12670
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Hawkes FM, Zeil J, Gibson G (2022) Vision in Mosquitoes, Chapter 19 in Ignell R, et al., eds. (2022) Sensory Ecology of Disease Vectors, Wageningen Academic Publishers, pp. 511-533. https://doi.org/10.3920/978-90-8686-932-9
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Hardy H, Hopkins RJ, Mnyone L, Hawkes FM (2022) Manure and mosquitoes: life history traits of two malaria vector species enhanced by larval exposure to cow dung, whilst chicken dung has a strong negative effect. Parasites & Vectors, 15(472). https://doi.org/10.1186/s13071-022-05601-3
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Hien AS, Sangaré I, Ouattara ELP, Sawadogo SP, Soma DD, Hamidou M, Diabaté A, Bonnet E, Ridde V, Fournet F, Hawkes FM, Kaupra C, Bouyer J, Abd-Alla AMM, Dabiré RK (2022) Chikungunya (Togaviridae) and dengue 2 (Flaviviridae) viruses detected from Aedes aegypti mosquitoes in Burkina Faso by qRT-PCR technique: Preliminary results and perspective for molecular characterization of arbovirus circulation in vector populations. Frontiers in Tropical Diseases, 3:920224. doi: 10.3389/fitd.2022.920224
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Zembere K, Chirombo J, Nasoni P, McDermott D, Divala L, Hawkes FM, Jones CM (2022) The human-baited host decoy trap (HDT) is an efficient sampling device for exophagic malaria mosquitoes within irrigated lands in southern Malawi. Scientific Reports, 12, 3428. https://doi.org/10.1038/s41598-022-07422-x.
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Hawkes, FM, Hopkins, RJ (2021) ‘The Mosquito: An Introduction’, in Hall, M & Tamir, D (eds), Mosquitopia: The Place of Pests in a Healthy World. Routledge, pp. 16-31, DOI https://doi.org/10.4324/9781003056034.
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Talom, BAD, Enyong, P, Cheke, RA, Djouaka, R, Hawkes, FM (2021) Capture of high numbers of Simulium vectors can be achieved with Host Decoy Traps to support data acquisition in the onchocerciasis elimination endgame. Acta Tropica, 221: 106020.
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Carnaghi, M, Belmain, SR, Hopkins, RJ, Hawkes, FM (2021) Multimodal synergisms in host stimuli drive landing response in malaria mosquitoes. Scientific Reports, 11, 7379. https://doi.org/10.1038/s41598-021-86772-4.
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López-Peña, D, Hawkes, FM, Gibson, GI, Johnston, C, Vaux, AGC, Lis-Cantín, Á, Medlock, JM, Cheke, RA (2021) Mosquito Magnet® traps as a potential means of monitoring blackflies of medical and veterinary importance. Medical and Veterinary Entomology. https://doi.org/10.1111/mve.12530.
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Sawadogo, SP, Nikièma, AS, Coulibal, S, Koala, L, Niang, A, Bougouma, C, Bougma, RW, Gnankine, O, Hawkes, FM, Boakye, D, Dabiré, RK (2021) Community implementation of human landing and non-human landing collection methods for Wucheria bancrofti vectors. Journal of Parasitology and Vector Biology, 13(1), 41-50. https://doi.org/10.5897/JPVB2020.0407.
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Hawkes, FM, Medlock, JM, Vaux, AGC, Cheke, RA, Gibson G (2020) Wetland Mosquito Survey Handbook: Assessing suitability of British wetlands for mosquitoes. Natural Resources Institute, Chatham, UK, http://www.wetlandlife.org/images/images/Project_outputs/NRI-PHE-UoG_Wetland_Mosquito_Survey_Handbook_v1-indexed.pdf.
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Tang, JY, Kosgei, J, Ochomo, E, Ndenga, BA, Ghiaseddin, R, Lobo, NF, Hawkes, FM, O’Tousa, JE (2020) Impact of visual features on capture of Aedes aegypti with host decoy traps (HDT). Medical & Veterinary Entomology, https://doi.org/10.1111/mve.12482.
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Davidson, J.R., Baskin, R.N., Hasan, H., Burton, T.A., Wardiman, M., Rahma, N., Saputra, F.R., Aulya, M.N., Wahid, I., Syafruddin, D, Hawkes, F.M., Lobo, N.F. (2020) Characterization of vector communities and biting behavior in South Sulawesi with host decoy traps and human landing catches. Parasites Vectors 13, 329. https://doi.org/10.1186/s13071-020-04205-z.
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Hawkes FM, Manin BO, Cooper A, Daim S, Homathevi R, Jelip J, Husin T, Chua TH (2019) Vector compositions change across forested to deforested ecotones in emerging areas of zoonotic malaria transmission in Malaysia. Scientific Reports, 9:13312 (https://doi.org/10.1038/s41598-019-49842-2).
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Abong'o B, Yu X, Donnelly MJ, Geier M, Gibson G, Gimnig J, ter Kuile F, Lobo NF, Ochomo E, Munga S, Ombok M, Samuels A, Torr SJ and Hawkes FM (2018) Host Decoy Trap (HDT) with cattle odour is highly effective for collection of exophagic malaria vectors. Parasites and Vectors, 11:533 (https://doi.org/10.1186/s13071-018-3099-7)
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Hawkes FM, Dabiré RK, Sawadogo SP, Torr SJ, Gibson G (2017) Exploiting Anopheles responses to thermal, odour and visual stimuli to improve surveillance and control of malaria. Scientific Reports, 7:17283 (http://rdcu.be/A0bE).
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Hawkes F, Manin BO, Ng SH, Torr SJ, Drakeley C, Chua TH, Ferguson HM (2017) Evaluation of electric nets as a means to sample mosquito vectors host-seeking on humans and primates. Parasites and Vectors, 10(338).
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Hawkes, FM and Gibson, G (2016) Seeing is believing: the nocturnal mosquito Anopheles coluzzii responds to visual host-cues when odour indicates a host is nearby. Parasites and Vectors, 9(320).
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Medlock, JM, Vaux, AGC, Gibson, G, Hawkes, FM, Cheke, RA (2014) Potential vector for West Nile virus prevalent in Kent. Veterinary Record, 175(11), 284-285.
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Whitehorn, LJ, Hawkes, FM, Dublon, IAN, (2013) Superplot3D: an open source GUI tool for 3d trajectory visualisation and elementary processing. Source Code for Biology and Medicine, 8(19).
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Hawkes, FM & Acott, TG (2013) People, environment and place: the function and significance of human hybrid relationships at an allotment in South East England. Local Environment, 18:10, 1117-1133, DOI: 10.1080/13549839.2013.787590.
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Hawkes, F, Young, S and Gibson, G (2012) Modification of spontaneous activity patterns in the malaria vector Anopheles gambiae when presented with host-associated stimuli. Physiological Entomology, 37(3), pp. 233-240.
- Research / Scholarly Interests:
Dr Hawkes combines basic research in the laboratory and field with applied and operational research, particularly vector ecology in the face of global environmental change and anthropogenic interventions.
Her fundamental research on vector behaviour is driven by the joint aims of elucidating the precise behavioural sequences that facilitate key aspects of the insect’s life history and identifying potential behavioural targets that can be incorporated into new vector surveillance and control tools. This research pipeline emphasises the strong link between basic research and impact, including developing, prototyping, patenting and commercialising/ mainstreaming tools. For instance, Dr Hawkes developed a new trap for disease-carrying insects that exploits their behaviour, which was recognised under the UK honours system within a Queen’s Anniversary Prize for Higher and Further Education (2019). This work is continued in her current projects aimed at supporting the entomological surveillance necessary for verifying whether onchocerciasis has been in eliminated in operational transmission zones.
She is also interested in how vector ecology and behaviour may be impacted by human activities. These research themes include how land use change and deforestation may be driving spillover of zoonotic malaria in Southeast Asia and how climate adapted cultivation practices may create agroecological landscapes more suitable for malaria vectors.
Within NRI, Dr Hawkes is a member of the Behavioural Ecology Research Group and the Chemical Ecology Research Group, and the Centre on Sustainable Agriculture for One Health.
- Teaching Programmes:
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BSc Environmental Science (module leader)
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MBiol/BSc Biology
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MSc Agriculture for Sustainable Development
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MSc Global Environmental Change
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PhD supervision
- Research Projects:
NIH “Emerging zoonotic malaria in Malaysia: linking human and mosquito surveillance with population genetic tools to evaluate adaptive human-human transmission risk” Role: Co-I (Apr 2022-2026, US$620,386)
Southeast Asia remains a global hotspot for emerging zoonotic infectious diseases with risk elevated in forested tropical regions undergoing intensive anthropogenic land-use change. The recent increase in transmission of the monkey malaria parasite Plasmodium knowlesi, endemic to Southeast Asia, exemplifies how these types of ecological linkage mechanisms can influence disease spill-over to humans. Alongside characterising P. knowlesi population genetic structure to understand transmission networks, this project aims to determine mosquito vector behavioural and landscape ecology factors contributing to increasing transmission of P. knowlesi in Sabah, Malaysian Borneo.
Infrared & AI to diagnose and quantify Onchocerca volvulus in blackflies (Co-I)
Bill & Melinda Gates Foundation (Nov 2021-Nov 2024, US$2.6 million)
Partners: University of Glasgow, Institute de Recherche en Sciences de la Santé Burkina Faso, Ifakara Health Institute Tanzania, Sightsavers International, Osun State University Nigeria, International Institute of Tropical Agriculture Benin
Bill & Melinda Gates Foundation “Improved Simulium capture for onchocerciasis elimination surveillance and the spatial distribution of blackfly biting” Role: PI (Nov 2021-Mar 2026, US$1,425,861)
Entomological surveillance is at the heart of the onchocerciasis elimination framework proposed by the World Health Organization. This project aims to develop suitable methods for the intensive sampling required to verify the interruption of transmission and eventual elimination of the disease by:
- testing and optimizing Esperanza Window Traps, Host Decoy Traps and oviposition traps for collecting the blackfly vectors of onchocerciasis,
- increasing entomological capacity in key skills such as blackfly identification, dissection, cytotaxonomy and molecular parasite screening in endemic countries, and
- determining the spatial distribution and intensity of vector biting, and therefore exposure risk, of different communities within transmission zones, using geostatistical modelling frameworks developed from contemporaneous entomological and serological field data.
MRC GCRF Global Infections Foundation Award “Human Decoy Trap; operational and social acceptability of novel tool to improve surveillance and control of mosquitoes and other disease vectors” Role: Co-I (Feb 2017-Jan 2019, £556,461)
Current tools for sampling malarial mosquitoes are time-consuming, ethically contentious and difficult to standardize. Accordingly, data between countries and regions cannot be reliably compared. This project tested a new, standardized and exposure-free mosquito trap, the Host Decoy Trap, against existing WHO-approved method the human landing catch and other techniques in a wide range of epidemiological and entomological settings in Burkina Faso, Cameroon and Benin, resulting in a commercial prototype trap that can be used for outdoor-biting mosquitoes. Research also included a Participatory Technology Assessment of various sampling methods, highlighting the attributes valued by field staff tasked with mosquito surveillance.
NERC Valuing Nature: Health & Wellbeing “Taking the bite out of wetlands: Managing mosquitoes and the socio-ecological value of wetlands for wellbeing” Role: Researcher Co-I (Aug 2016-Jul 2020, £1,307,532)
The WetlandLIFE project explored the ecological, economic, social and cultural values associated with wetlands in England to better understand how to manage change into the future, alongside an ecological focus on mosquito management now and historically to support the recreational use of wetlands for the health and well-being of local human populations. The project delivered guidance for managing mosquitoes in the context of healthy wetland environments, art-science collaborations and artistic installations that encouraged engagement with mosquito discourses and the wetland environment, as well as sociological and historical scholarship on how English wetlands have shaped contemporary society, and economic valuations of wetlands and how those value may change under pressure from potential future mosquito-influenced futures.
All project outputs can be seen on the WetlandLIFE website: http://www.wetlandlife.org/project-outputs
Current Postgraduate Students
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Rosalia Joseph: Analysing gender disparities in malaria exposure in Sub-Saharan Africa (VC Scholarship; 2024-present).
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Lachlan Keneally: Relational and political ecology perspectives on urban food and commoning in Bristol (UK Food Systems Centre for Doctoral Training; 2023-present).
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Ainhoa Rodriguez-Pereira: The impact of Apicomplexan’s methylerythritol phosphate (MEP) pathway on gene regulation and behaviour of the host (BBSRC London Interdisciplinary Doctoral Programme [LIDo]; 2023-present).
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Monique Shepherd-Gorringe: Development of a novel, long-acting formulation for the treatment and prevention of malaria (Doctoral Training Alliance; 2018-present).
- Greenwich Academic Literature Archive (GALA) link:
https://gala.gre.ac.uk/cgi/search/archive/advanced?order=-date%2Fcreators_name%2Ftitle&_action_search=1&cache=20449351&screen=Search&exp=0%7C1%7C-date%2Fcreators_name%2Ftitle%7Carchive%7C-%7Ccreators_name%3Acreators_name%3AALL%3AEQ%3AHAWKES%2C+FRANCES%7C-%7Ceprint_status%3Aeprint_status%3AANY%3AEQ%3Aarchive%7Cmetadata_visibility%3Ametadata_visibility%3AANY%3AEQ%3Ashow&search_offset=0
- Responsibilities:
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Line management responsibilities
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Mentoring of Early Career Researchers
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Developing impact case studies for REF
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Reviewer for 10+ academic journals
- Awards:
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Fellow of the Royal Entomological Society (Member since 2010)
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Member of Roll Back Malaria’s Vector Control Working Group (2018-)
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Member of Asia Pacific Malaria Elimination Network’s Vector Control Working Group (2018-)
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Member of the Royal Society of Tropical Medicine & Hygiene (2012-)
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World Health Organization’s Onchocerciasis Technical Advisory Subgroup invited expert (2022-)
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Technical Steering Committee member of DISSECT-Developing Innovative Scalable Solutions to Entomology Gaps and Cross-Border Transmission of Onchocerciasis (2022-2024)
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Scientific Reports Editorial Board Member (2018-2021)
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External examiner (“opponent”) for PhD thesis defence at the Swedish University of Agricultural Science, SLU
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Queen’s Anniversary Prize for Higher and Further Education (2019)
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Awarded full scholarship to attend the Biology of Vector-Borne Diseases Training Programme, University of Idaho (2018)
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Winner of Swiss Malaria Group’s #EndMalaria video competition (2017)
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Awarded Vice-Chancellor’s PhD Scholarship (2009-2013)
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University of Greenwich Inaugural Student of the Year (2012)
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Selected to present PhD Research to Members of Parliament, House of Commons, supported by the Society of Biology (2012)
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Best Oral Presentation at Royal Society of Tropical Medicine & Hygiene’s Research in Progress Conference (2012)
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Merit Award for Outstanding Achievement in Undergraduate Degree (2009)
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Prize for Best Honours Dissertation in the School of Science (2009)
- External Profiles:
ORCID
https://orcid.org/0000-0002-0964-3702
LinkedIn
https://www.linkedin.com/in/frances-hawkes-97647631
Google Scholar
https://scholar.google.co.uk/citations?user=RRwlOW4AAAAJ&hl=en
Research Gate
https://www.researchgate.net/profile/Frances-Hawkes
Phone: +44 (0)1634 88 3132
Associate Professor in Medical Entomology
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Dr G. Mandela Fernandez-Grandon
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- Qualifications:
Bsc (Hons), PhD
- Biography:
Dr G. Mandela Fernandez-Grandon joined the Natural Resources Institute in 2013 as a postdoctoral Research Fellow. His work at NRI utilises his expertise in Behavioural Entomology and Chemical Ecology.
Dr Fernandez-Grandon obtained his BSc (Hons) in Biology from the University of Dundee. His initial interest in agricultural entomology was sparked by a final year project investigating the success of certain aphid clone varieties within Scotland. Completion of his undergraduate degree was immediately followed with work at the James Hutton institute (then SCRI) under Dr Brian Fenton. During this time Dr Fernandez-Grandon worked on testing insecticide susceptibility within aphid clones, developing a technique of RNAi with aphids and testing for new microsatellite markers to assist in identification of field species.
After time spent travelling in South America and visiting a laboratory in Talca, Chile to work with Electrical Penetration Graph (EPG), Dr Fernandez-Grandon returned to the UK to complete a PhD with Professor Guy Poppy at the University of Southampton. This four-year PhD covered research in Entomology, Chemical Ecology and Biological Control focussing on the effect of the aphid sex pheromone, (4aS,7S,7aR)-nepetalactone, on the behaviour of the parasitoid, Aphidius colemani, and its host the peach-potato aphid, Myzus persicae. Following experience in agricultural pests and food security, Dr Fernandez-Grandon completed Postdoctoral research at the London School of Hygiene and Tropical Medicine into pests of medical importance and disease control. This work, completed under Dr James Logan in collaboration with Professors John Armour of the University of Nottingham and John Pickett of Rothamsted Research, investigated the heritability of human odour and how these attracted the yellow fever mosquito, Aedes aegypti.
- Selected Publications:
- J. Li, J. Lin, G. M. Fernández-Grandon, M. You, X. Xia (Accepted) Functional identification of C-type lectin in the diamondback moth, Plutella xylostella (L.) innate immunity Journal of Integrative Agriculture
- Li, X.W., … Fernández-Grandon, G.M. and Lu, Y.B., 2021. Intercropping rosemary (Rosmarinus officinalis) with sweet pepper (Capsicum annum) reduces major pest population densities without impacting natural enemy populations. Insects, 12(1), p.74.
- Hafeez, M., … Fernández-Grandon, G.M. and Zalucki, M.P., 2021. De novo transcriptomic analyses revealed some detoxification genes and related pathways responsive to noposion yihaogong® 5% EC (Lambda-Cyhalothrin 5%) exposure in Spodoptera frugiperda third-instar larvae. Insects, 12(2), p.132.
- Hafeez, M.… Wang, L. and Fernández-Grandon, G.M., 2021. Sublethal effects of bistrifluron on key biological traits, macronutrients contents and vitellogenin (SeVg) expression in Spodoptera exigua (Hübner). Pesticide Biochemistry and Physiology, p.104802.
- Hafeez, M., … Fernández‐Grandon, G.M. and Lu, Y.B., 2021. Role of digestive protease enzymes and related genes in host plant adaptation of a polyphagous pest, Spodoptera frugiperda. Insect Science.
- Fernández-Grandon, G.M., Harte, S.J., Ewany, J., Bray, D. and Stevenson, P.C., 2020. Additive effect of botanical insecticide and entomopathogenic fungi on pest mortality and the behavioral response of its natural enemy. Plants, 9(2), p.173.
- Hafeez, M., … Fernández-Grandon, G.M., Li, X., Gulzar, A., Ali, B., Rehman, M. and Ali, S., 2020. RNA interference-mediated knockdown of a cytochrome P450 gene enhanced the toxicity of α-cypermethrin in xanthotoxin-fed larvae of Spodoptera exigua (Hübner). Pesticide biochemistry and physiology, 162, pp.6-14.
- Hafeez, M., … Fernández‐Grandon, G.M., Nawaz, M., Ahmad, A. and Wang, M., 2019. Gossypol‐induced fitness gain and increased resistance to deltamethrin in beet armyworm, Spodoptera exigua (Hübner). Pest management science, 75(3), pp.683-693.
- Hafeez, M., Liu, S., Jan, S., Gulzar, A., Fernández-Grandon, G.M., Qasim, M., Khan, K.A., Ali, B., Kedir, S.J., Fahad, M. and Wang, M., 2019. Enhanced effects of dietary tannic acid with chlorantraniliprole on life table parameters and nutritional physiology of Spodoptera exigua (Hübner). Pesticide biochemistry and physiology, 155, pp.108-118.
- Hafeez, M., … Fernández-Grandon, G.M., Shahid, M. and Wang, M., 2019. Sub-lethal effects of lufenuron exposure on spotted bollworm Earias vittella (Fab): key biological traits and detoxification enzymes activity. Environmental Science and Pollution Research, 26(14), pp.14300-14312.
- Hafeez, M., Liu, S., Jan, S., Shi, L., Fernández-Grandon, G.M., Gulzar, A., Ali, B., Rehman, M. and Wang, M., 2019. Knock-down of gossypol-inducing cytochrome P450 genes reduced deltamethrin sensitivity in Spodoptera exigua (Hübner). International journal of molecular sciences, 20(9), p.2248.
- Rowley, C., Pope, T.W., Cherrill, A., Leather, S.R., Fernández‐Grandon, G.M. and Hall, D.R., 2017. Development and optimisation of a sex pheromone lure for monitoring populations of saddle gall midge, Haplodiplosis marginata. Entomologia Experimentalis et Applicata, 163(1), pp.82-92.
- Fernández-Grandon, G.M., Gezan, S.A., Armour, J.A., Pickett, J.A. and Logan, J.G., 2015. Heritability of attractiveness to mosquitoes. PLoS One, 10(4), p.e0122716.
- Fernandez-Grandon, G.M. and Poppy, G.M., 2015. Response of Aphidius colemani to aphid sex pheromone varies depending on plant synergy and prior experience. Bulletin of entomological research, 105(04), pp.507-514.
- Fernández-Grandon, G.M., Woodcock, C.M. and Poppy, G.M., 2013. Do asexual morphs of the peach-potato aphid, Myzus persicae, utilise the aphid sex pheromone? Behavioural and electrophysiological responses of M. persicae virginoparae to (4aS, 7S, 7aR)-nepetalactone and its effect on aphid performance. Bulletin of entomological research, 103(4), p.466
- Fernández-Grandon, G.M., Girling, R.D. and Poppy, G.M., 2011. Utilizing insect behavior in chemical detection by a behavioral biosensor. Journal of Plant Interactions, 6(2-3), pp.109-112.
- Research / Scholarly Interests:
My work looks to increase our understanding of Chemical Ecology and Insect Behaviour in pests relevant to agriculture and human health. I have a strong interest in how evolution has shaped behaviour in organisms and particularly their interaction with other species.
- Greenwich Academic Literature Archive (GALA) link:
http://gala.gre.ac.uk/view/authors/6144.html
- Responsibilities:
Postdoctoral Research Scientist
- Awards:
- Member of the Royal Entomological Society
- External Profiles:
ORCID
https://orcid.org/0000-0002-2993-390X
Phone: +44 (0)1634 88 3057
Research Fellow in Behavioural Entomology
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Dr Gonçalo Ramalho E Silva
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- Qualifications:
PhD, FHEA
- Biography:
Dr Gonçalo Silva is a plant virologist at the Natural Resources Institute (NRI), University of Greenwich, with over 15 years of experience in developing innovative laboratory and field-based diagnostic tools for plant viruses and their vectors. His research focuses on improving plant health and supporting the development of sustainable control strategies.
Since joining NRI in 2013, Gonçalo has led and collaborated on a range of international, multidisciplinary projects with a strong emphasis on molecular diagnostics, virus discovery, and the application of high-throughput sequencing technologies and bioinformatics. His work also includes the development of a novel smart trap for the early detection of regulated plant pests, as part of an Innovate UK-funded initiative. This proof-of-concept technology contributes to strengthening the UK’s biosecurity infrastructure and enhancing the efficiency of pest surveillance and inspection systems
Gonçalo’s work has been supported by major funders including the Bill & Melinda Gates Foundation, the Royal Society, BBSRC, and Innovate UK, and has consistently integrated capacity building and knowledge exchange activities.
- Selected Publications:
- Munguti F.M., Kilalo D.C., Yegon H.K., Macharia I., Seal S.E., Mwango’mbe A.W., Nyaboga E.N., Silva G. (2024) Real-time reverse transcription recombinase polymerase amplification (RT-RPA) assay for detection of cassava brown streak viruses. Scientific Reports 14, 12438 (2024). https://doi.org/10.1038/s41598-024-62249-y
- Festus R.O., Seal S.E., Prempeh R., Quain M.D., Silva G. (2023) Improved Reverse Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) for the Rapid and Sensitive Detection of Yam mosaic virus. Viruses 2023, 15, 1592. https://doi.org/10.3390/v15071592
- Diouf M.B., Festus R., Silva G., Guyader S., Umber M., Seal S., Teycheney P.Y. (2022) Viruses of Yams (Dioscorea spp.): Current Gaps in Knowledge and Future Research Directions to Improve Disease Management. Viruses 2022, 14, 1884. https://doi.org/10.3390/v14091884
- Silva G., Bömer M., Turaki A.A., Nkere C.K., Kumar P.L., Seal S.E. (2022) Homing in on Endogenous Badnaviral Elements: Development of Multiplex PCR-DGGE for Detection and Rapid Identification of Badnavirus Sequences in Yam Germplasm. Frontiers in Plant Science. 13:846989. https://doi.org./10.3389/fpls.2022.846989
- Kutnjak D., Tamisier L., Adams I., Boonham N., Candresse T., Chiumenti M., De Jonghe K., Kreuze J.F., Lefebvre M., Silva G., Malapi-Wight M., Margaria P., Mavrič Pleško I., McGreig S., Miozzi L., Remenant B., Reynard J-S., Rollin J., Rott M., Schumpp O., Massart S., Haegeman A. (2021) A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses. Microorganisms. 2021; 9:841. https://doi.org/10.3390/microorganisms9040841
- Silva G., Tomlinson J., Onkokesung N., Sommer S., Mrisho L., Legg J., Adams I.P., Gutierrez-Vazquez Y., Howard T.P., Laverick A., Hossain O., Wei Q., Gold K.M., Boonham N. (2021) Plant pest surveillance: from satellites to molecules. Emerging Topics in Life Sciences ETLS20200300. doi: https://doi.org/10.1042/ETLS20200300
- Tembo M., Adediji A.O., Bouvaine S., Chikoti P.C., Seal S.E., Silva G. (2020) A quick and sensitive diagnostic tool for detection of Maize streak virus. Scientific Reports 10, 19633. https://doi.org/10.1038/s41598-020-76612-2
- Nkere C.K., Otto E., Atiri G.I., Onyeka J., Silva G., Bömer M., Seal S.E and Kumar, P.L. (2020) Assessment of Yam mild mosaic virus coat protein gene sequence diversity reveals the prevalence of cosmopolitan and African group of isolates in Ghana and Nigeria. Current Plant Biology. https://doi.org/10.1016/j.cpb.2020.100156
- Silva G., Bömer M., Rathnayake A.I., Sewe S.O., Visendi P., Oyekanmi J.O., Quain M.D., Akomeah B., Kumar P.L. & Seal S.E. (2019) Molecular Characterization of a New Virus Species Identified in Yam (Dioscorea spp.) by High-Throughput Sequencing. Plants 8, 167. https://doi.org/10.3390/plants8060167
- Silva G., Lecourt J., Clover G.R.G. & Seal S.E. (2018) First record of Grapevine Pinot gris virus infecting Vitis vinifera in the United Kingdom. New Disease Reports 38, 7. http://dx.doi.org/10.5197/j.2044-0588.2018.038.007
- Bömer M., Rathnayake A.I., Visendi P., Sewe O.S., Sicat J.P.A., Silva G., Kumar P.L. & Seal S.E. (2018) Tissue culture and next-generation sequencing: A combined approach for detecting yam (Dioscorea spp.) viruses. Physiological and Molecular Plant Pathology 105:54-66. https://doi.org/10.1016/j.pmpp.2018.06.003
- Silva G., Oyekanmi J., Nkere C.K., Bömer M., Kumar P.L. & Seal S.E. (2018) Rapid detection of potyviruses from crude plant extracts. Analytical Biochemistry 546:17–22. https://doi.org/10.1016/j.ab.2018.01.019
- Nkere C.K., Oyekanmi J.O., Silva G., Bömer M., Atiri G.I., Onyeka J., Maroya N.G., Seal S.E. & Kumar P.L. (2018) Chromogenic detection of yam mosaic virus by closed‑tube reverse transcription loop‑mediated isothermal amplification (CT‑RT‑LAMP). Archives of Virology 163:1057–1061. https://doi.org/10.1007/s00705-018-3706-0
- Bömer M., Rathnayake A.I., Visendi P., Silva G. & Seal S.E. (2018) Complete genome sequence of a new member of the genus Badnavirus, Dioscorea bacilliform RT virus 3, reveals the first evidence of recombination in yam badnaviruses. Archives of Virology 163:533–538. https://doi.org/10.1007/s00705-017-3605-9
- Silva G., Lecourt J., Clover G.R.G. & Seal S.E. (2017) First report of Grapevine fanleaf virus infecting grapevine in the United Kingdom. New Disease Reports 36, 9. http://dx.doi.org/10.5197/j.2044-0588.2017.036.009
- Silva G., Bömer M., Nkere C., Kumar P.L. & Seal S.E. (2015) Rapid and specific detection of Yam mosaic virus by reverse-transcription recombinase polymerase amplification. Journal of Virological Methods 222:138-144. https://doi.org/10.1016/j.jviromet.2015.06.011
- Research / Scholarly Interests:
My research focuses on the development and application of innovative diagnostic techniques for the rapid and accurate detection of plant viruses and their insect vectors. These tools are essential for timely decision-making and underpin the production of virus-free planting material, supporting resilient seed systems.
I have a strong interest in leveraging cutting-edge technologies such as loop-mediated isothermal amplification (LAMP), CRISPR-based diagnostics, and portable sequencing platforms like the MinION (Oxford Nanopore Technologies) for virus discovery, molecular characterization, and the study of plant viral populations. My work also includes the development of smart trap technologies for the early detection and identification of insect vectors, contributing to enhanced pest surveillance and biosecurity.
In parallel, I am committed to strengthening diagnostic capacity in low- and middle-income countries. I regularly design and deliver training courses and workshops in virus and vector diagnostics, facilitating effective technology transfer to laboratories across East and West Africa.
Core Relevant Skills
- Development of novel laboratory and field-based diagnostics for plant viruses, including LAMP, CRISPR, and MinION-based platforms
- Molecular characterization and discovery of plant viruses using high-throughput sequencing and bioinformatics
- Design and delivery of capacity-building programmes in diagnostics and vector identification
- Innovation in pest surveillance tools, including smart traps for real-time insect vector monitoring
- Teaching Programmes:
- MSc Agriculture for Sustainable Development
- BSc Biology
- Module leader of Plant Science
- Research Projects:
Smart traps for improved surveillance and early detection of plant regulated pests
(2024-2025, funded by Innovate UK)
Bemisia tabaci is a major pest and virus vector affecting economically important crops such as tomato and cucumber. It is a regulated pest in the UK and frequently intercepted on imported plants, particularly poinsettia. Current surveillance relies on visual inspections and sticky traps, which are time-consuming and require expert identification due to similarities with non-quarantine species like Trialeurodes vaporariorum.
This project aims to develop and evaluate a novel smart trap for the automatic, real-time detection of B. tabaci. The prototype combines a suction mechanism with an optical sensor powered by machine learning, enabling passive data collection and remote monitoring. This innovation has the potential to enhance UK biosecurity by improving the efficiency and accuracy of pest surveillance and reducing the burden on inspection services.
Plant virus ecology: the role of parasitic weeds in virus epidemiology and implications for crop production
(2023–2024, funded by the University of Greenwich)
Plant virus ecology seeks to understand the ecological role of viruses and their vectors in managed and natural environments and the reciprocal effects of the ecosystems on virus and vectors distribution and virus evolution.
In this project, we investigated the presence of viruses in parasitic weeds (Cuscuta spp. and Striga spp.) by high-throughput sequencing (HTS) to get an unbiased detection of all DNA and RNA viruses present in these samples. Data from HTS will be used to develop targeted diagnostics to detect vi-ruses in insects to identify potential vectors.
Virus survey in UK vineyards
(2021 – 2023, Consultancy service to NIAB EMR Viticulture consortium)
The UK wine industry has grown markedly in recent years and is an important sector to the UK economy. Viral diseases of grapevine can however jeopardize this growth. This work aims at studying the diversity and distribution of viruses infecting UK vineyards and developing on-site diagnostic tools to rapidly identify infected vines in established vineyards. These tools will help in reducing the costs associated with the delayed removal of infected vines and limit the spread of virus diseases in vineyards.
Using High-Throughput Sequencing indexing to strengthen the yam (Dioscorea spp.) seed systems in Sub-Saharan Africa
(2019 – 2022, Royal Society International Collaboration Award)
This collaborative project will transfer state-of-the-art diagnostic techniques to the Biotechnology Laboratory of the Council for scientific and Industrial Research-Crops Research Institute (CSIR-CRI), Ghana thereby improving capacity for yam disease diagnostics and seed certification in the country. The success of this project will ensure the timely availability of disease-free seed yams on a price-competitive basis as the system is producing planting materials to feed the seed yam commercial farmers in Ghana.
Identification of mealybug vectors involved in the transmission of badnavirus infecting yam in Northern Nigeria
(2019-2020, funded by BBSRC Global Challenges Research Fund: “CONNECTED” - Community network for African vector borne plant diseases award)
Yam productivity is severely compromised by the high impact of yam viruses and their insect vectors. Sap-feeding mealybugs are both direct plant pests and active vectors of badnaviruses, but only little is known about the role they play as vectors of yam badnaviruses. We plan to identify mealybug species infesting yam fields in northern Nigeria and thought to be vectors of Dioscorea bacilliform viruses (DBVs), detect and characterize DBV species in individual mealybugs, and evaluate whether there are potential correlations between certain mealybug- and DBV-species, which could inform vector specificity.
Renewal: Enabling Research Tools for Cassava and Yam Virologists and Breeders
(2016-2024, funded by the Bill and Melinda Gates Foundation)
This project is a continuation of the ‘Development of On-Farm Robust Diagnostic Toolkits for Yam Virus Diseases’ project (ended September 2016). The reinvestment is to optimize the yam virus diagnostic tests developed to date, as well as make further concerted efforts to generate improved antisera for yam potyviruses and badnaviruses to assist both the development of lateral flow devices for field diagnostics, and rapid concentration of virus particles for nucleic acid tests. The reinvestment will focus on evaluation of the best tests for use in sub-Saharan Africa (SSA), and technology transfer to West African scientists and laboratories. Transfer of the tests will enable W. African National Agricultural Research Systems (NARS) to determine the virus-status of yam breeding lines and certify planting material for distribution to yam smallholders is virus-free.
Building links with the Kent wine industry
(2015–2017, funded by the University of Greenwich)
Grapevine (Vitis vinifera) is a major crop worldwide and produces a valuable agricultural commodity. The UK wine industry is a fast-growing sector and in 2017, an area of c. 2,500 hectares had been planted, a tripling of the area since 2000. Production of wine is projected to increase from the current 6 million bottles of wine per annum to c. 40 million bottles by 2040. This project aims to increase our knowledge about the presence and incidence of viruses in UK vineyards to develop efficient control strategies at this crucial and early stage of vineyard establishment. This project will assist the UK grapevine grower’s network by creating awareness of the presence of economically important viral diseases in UK vineyards and contributing to the sustainability of the UK grapevine industry.
Development of On-Farm Robust Diagnostic Toolkits for Yam Virus Diseases
(2012-2016, funded by The Bill and Melinda Gates Foundation)
Yams are propagated vegetatively through their tubers, which leads to an accumulation of tuber-borne diseases in farmers' planting material and subsequent serious crop yield losses. The economically important tuber-borne diseases are caused by viruses, and the only effective method of controlling these virus diseases is to use virus-free planting material. The scarcity and associated high expense of such material has been identified as one of the most important critical constraints to increasing yam production and productivity in West Africa. The goal of this project is to develop sensitive and specific cost-effective diagnostic tests for the most important African yam viruses and then adapt these tests to be suitable for on-farm virus-indexing. Due to the presence of integrated pararetrovirus sequences (EPRVs) in some yam breeding line genomes it is also necessary to identify which lines contain activatable EPRV sequences and identify diagnostic procedures for these EPRVs. The diagnostic toolkits and procedures developed will be suitable for use in West African indexing centres and this will lead to the delivery of high-quality virus-free planting material of preferred yam varieties for multiplication and distribution to yam smallholders in West Africa. This will lead to improved food security and income generation for smallholders in West Africa.
- Research Students:
Currently supervising 3 PhD students, with completed supervision of 3.
- Greenwich Academic Literature Archive (GALA) link:
http://gala.gre.ac.uk/view/authors/5997.html
- Responsibilities:
NRI representative of the Faculty Research Degrees sub-Committee
- Awards:
- Fellow, Higher Education Academy (FHEA)
- Member of the British Society of Plant Pathology
- External Profiles:
ORCID
https://orcid.org/0000-0001-5544-2947
LinkedIn
https://www.linkedin.com/in/goncalosilva14415417
Google Scholar
https://scholar.google.com/citations?user=-bljz2gAAAAJ&hl=en
Research Gate
https://www.researchgate.net/profile/Goncalo_Silva3
Phone: +44 (0)1634 88 3158
Senior Lecturer in Plant Virology and Diagnostics
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